UFO11974.5prime Sequence
1154 bp (1063 high quality bases) assembled on 2012-06-29
> UFO11974.5prime
TGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCG
TATAGCATACATTATACGAAGTTATCAGTCGACATGCGCCCGGAGTTCAT
AGCTGAACGGAAGCAAGCCCTGCAAGAGTACATAAACGCCGTACTAATGA
ATCCCATATTGGCATCCTCGCTGCCAGCCAAGCGCTTTGTGGATCCCGAG
AGTTACTCGCAGTCCTTTCACGACCATGCCGTGCAGAATGCTATGCTCTG
CCTGCGCAACGACACTACGTGGTCGCTGGGTGGAAGTATGGGTGCCATAG
GCTGGCGCCTCCGGAAGCACTACTTTAAGGTCACTACAAAGCCGCCGGAG
AAGAGCAGCAACAAGCAACTGGTTAAGAGCGGTTCACAGACCCATCAGAG
CAAACATTTCGCCGCTGGGAGCAGCAATGGCAGCGGTCACTCCATCGACG
CCGGAACCTTGGATCCCGGGTCAGAGGTGGTGGCTGAGTGGCTGGAGTAC
GGACCCGACAAGTTTATCGACGAAAAAGAAATCGGGGGCATAATGAAAAG
CCTGATGGGCCTGCAGCATCCGCACATCGAGCCCGTTCTCCTGGCAGCCC
ACACCGAAAACGGTTGCCTGGTCATAAGAAAATTCCACAAGCATGGTACT
TTAAAGGATGTTTTGTGCATGGCCGCGAATCCAAAGAATACATTTCTTAG
CAAGTACGGCAATCCCAAGGGGCGCACTGCGCTTTCAATGAAACAAGTGG
CTACATATGGGAAGCAGATTCTAGAGGCCCTAATATTTTTGCACTCGAAA
GGGATACGCATATGGTCACCTACATTCCGGAAACATAGTGATAGTCGACG
ATTGTGTTAAGCTACTCGACATCGAGAACTTTTTGCTGGGCGTTCCAGCG
TTTTACCGGGCCATTTTTCATGCAGCACAGTAAAATCCATGCCATCGAGA
CCATTGATGTTTACTGTTTTGGTCATGTCCTCTCGAAATGGCATGGGTAT
CCTCTGCAGGAGTCTGTCGTGCGCCAGATCACCGATGTCCCGAAGCGCTG
AAATGTCTTCTGGAAGAGCATTCTTTCAAGAAGCTTGCAAAGCCGGCTGC
GACTCTGGAGCATTGGTTGGGTCACAGATTCTTCTTGCAATACCCTCAAC
CCGA
UFO11974.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:50:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8726-RC | 3470 | CG8726-RC | 548..1623 | 82..1151 | 5005 | 98.3 | Plus |
| CG8726-RB | 3336 | CG8726-RB | 513..1588 | 82..1151 | 5005 | 98.3 | Plus |
| CG8726-RA | 3371 | CG8726-RA | 548..1623 | 82..1151 | 5005 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:50:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7970774..7971183 | 631..222 | 2050 | 100 | Minus |
| 2R | 25286936 | 2R | 7970235..7970475 | 1051..814 | 930 | 97.1 | Minus |
| 2R | 25286936 | 2R | 7970530..7970713 | 816..632 | 875 | 99.5 | Minus |
| 2R | 25286936 | 2R | 7971244..7971384 | 222..82 | 705 | 100 | Minus |
| 2R | 25286936 | 2R | 7970082..7970176 | 1143..1052 | 210 | 88.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:50:31 has no hits.
UFO11974.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:16 Download gff for
UFO11974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8726-RC | 591..1670 | 78..1153 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:42 Download gff for
UFO11974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8726-RA | 545..1624 | 78..1153 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:17 Download gff for
UFO11974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8726-RA | 545..1624 | 78..1153 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:17 Download gff for
UFO11974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7970235..7970474 | 815..1051 | 97 | <- | Minus |
| 2R | 7970532..7970713 | 632..814 | 99 | <- | Minus |
| 2R | 7970774..7971182 | 223..631 | 100 | <- | Minus |
| 2R | 7971244..7971387 | 78..222 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:42 Download gff for
UFO11974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3857740..3857979 | 815..1051 | 97 | <- | Minus |
| arm_2R | 3858037..3858218 | 632..814 | 99 | <- | Minus |
| arm_2R | 3858279..3858687 | 223..631 | 100 | <- | Minus |
| arm_2R | 3858749..3858892 | 78..222 | 98 | | Minus |
