UFO11975.5prime Sequence
981 bp (895 high quality bases) assembled on 2012-06-29
> UFO11975.5prime
TGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCG
TATAGCATACATTATACGAAGTTATCAGTCGACATGATGGTTAGCAAATT
GTGGAACAGCTGCTTCCCGGAGTTCACCCCGGACCATGTGCATCGACACA
ACTTTTACCTATGCCAGTGGCAACGGAACACGCAGGTGCGCATCGTTTAC
CTGTTCTACCGATGGATAACGGCCATCACCTGCCTGGCGGCACTGGTCTG
CTCCTTGCTGGACATTGGGCGCACGGACGAGCACTTTGAGCACCACTATG
CCAAGTGGTGGATCTACCTGACCCACTGGGGACTGCTCTTCTGCACAGTC
CAGGCCTGGCTGGCCGCCTGGATAGTGACCCAGGGCATGATGGTGGAGCG
CGAGGACTTCGAGATTGTGCGGCAGGCGAAGAAGAGCCGCCTGCACCACT
TGTACTGGGTGCTCTACACCTGTGCCACTGTCTATGCGTTCATCGTCACC
ATGTGCTATTGGCTACTGGTCCACAATCCCGGTAAGGCAAGCTTTCTAGA
CCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATA
ATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTG
CTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAA
CAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTC
CAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTA
CTGTTGTAATTCATTAAGCATCTGCGCTGAGCACACACGCTGTGACTGAT
CGCACGCTCACACTGCCTGTTATTGCTGAAGGAATCTGATACATGACCGG
AACTCACAACTCACTGTGACACGCAGTTCATAGTCCCTCACACGAATTTA
CGGAATGAGTTATATTGTACCCTCACTATGT
UFO11975.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:50:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43778-RC | 2595 | CG43778-RC | 2027..2479 | 84..536 | 2265 | 100 | Plus |
| CG43778-RA | 6433 | CG43778-RA | 2027..2474 | 84..531 | 2240 | 100 | Plus |
| CG43778-RD | 6433 | CG43778-RD | 2027..2474 | 84..531 | 2240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:50:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13307930..13308300 | 536..166 | 1855 | 100 | Minus |
| 2L | 23513712 | 2L | 13308410..13308493 | 167..84 | 420 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:50:34 has no hits.
UFO11975.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:17 Download gff for
UFO11975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16970-RB | 1998..2462 | 74..540 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:45 Download gff for
UFO11975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43778-RC | 2019..2483 | 74..540 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:18 Download gff for
UFO11975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43778-RC | 2019..2483 | 74..540 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:18 Download gff for
UFO11975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13307926..13308298 | 168..540 | 99 | <- | Minus |
| 2L | 13308410..13308501 | 74..167 | 96 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:45 Download gff for
UFO11975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13307926..13308298 | 168..540 | 99 | <- | Minus |
| arm_2L | 13308410..13308501 | 74..167 | 96 | == | Minus |
