UFO11976.5prime Sequence
1206 bp (1095 high quality bases) assembled on 2012-06-29
> UFO11976.5prime
CTCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACT
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAAGCGGGGCAA
GAAGCAATGGGGCACCAGGGAAAGATCAGGCATGAGCTTCCTTATCGTCA
TCACCTTCTTCGCCGTCTTTGGACTAATCATTCTAACTGAGGTCTTCATG
ATCGACGAGCGCACCCACAGCGGCATGTTGGCCATGAGGGCGGGCGGCGG
TGGCGGTGCCAGTCTGGGCGGACGGATGGGCGACTCGATGCCGGATTATG
ATAATGTTAAGGACGACTACGATCTATTGGATGCCAGCATTTTGAGTGAT
AATAAATTAGGATTTGTTCAGCTGCGCGACAATAAATTGAAAATTCAAGA
AGCCGCAGGCGCCGATGGTCAGCGCCTGGCCGGAATGCTTCTCAATGGCG
GTGGCGGTGGTGGTGGAGCCGGAGCGTTTGGCGTCAATGTACCGCTCATA
CCCTGGGGCCAGGTGCTGCCGGACAAGGTGGAGGAGACCCTGCCCCATTT
CCCGTTTGGCACACGGCCCATCGATGGCGCCTGGCAGGTTGTCAACGGCA
CCCGCTTCAAGTTCTTTGTCTACTCCGCCTACTTCGACCGGCGCGAAGGA
GCACGCCTGGTGCGAGTGGTGGGCGCCACCAAGACTCGGGGACCGGAGCG
GGTGTGGTGTCGATTCTGGTACGGACCGAGTGCTGGCAATGGCACCGATG
CGGGCTCCTCCACGGCACGTGCCAAGTACTCCTCGGCCACTGTGATGGCT
CGCGTCAAGATTATTCGCGAGAACTGGAATCTAAAATACAGCGCCTGTTT
CATACTGTGCCCGGTACGAACTCCACCGCTGTCAGTTCCTCATTTCGTGA
GCGTGGTATCCCGTTTGCGTGCTCCGCCTGGTAATTTGCTGACTCTACGA
AACACCGACCAGGATGCGGACTTTGCGGCGAGCAGAGCGCGTAATTCGAG
TGCCAAGAAAGGATCGCCAGTGGGTCATCCTCGCGAGTGGCGATAACATA
CCCGATCGCATAGCGTCTGCGTGAACCTTGCACTTCACTACGACAGCGTT
GATTCTTATGAATACTTGGAGTTTTATGCACCTGCTGGTGGTGCCCAATC
ACTTCTACACCAACTTGGGACCACGCCTCCTGCTCTTGAACTATCAAGGT
CTGTGT
UFO11976.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:50:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9395-RD | 3898 | CG9395-RD | 574..1687 | 86..1183 | 5025 | 97.7 | Plus |
| CG9395-RC | 4191 | CG9395-RC | 867..1980 | 86..1183 | 5025 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:50:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13352801..13353212 | 809..398 | 2060 | 100 | Minus |
| 2L | 23513712 | 2L | 13352351..13352635 | 1087..808 | 1215 | 97.5 | Minus |
| 2L | 23513712 | 2L | 13353714..13353836 | 312..190 | 615 | 100 | Minus |
| 2L | 23513712 | 2L | 13354100..13354207 | 193..86 | 540 | 100 | Minus |
| 2L | 23513712 | 2L | 13353312..13353401 | 399..310 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:50:37 has no hits.
UFO11976.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:17 Download gff for
UFO11976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9395-RC | 233..1374 | 78..1197 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:46 Download gff for
UFO11976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9395-RC | 857..1998 | 78..1197 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:20 Download gff for
UFO11976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9395-RC | 857..1998 | 78..1197 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:20 Download gff for
UFO11976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13352226..13352633 | 810..1197 | 92 | <- | Minus |
| 2L | 13352801..13353210 | 400..809 | 100 | <- | Minus |
| 2L | 13353312..13353399 | 312..399 | 100 | <- | Minus |
| 2L | 13353715..13353834 | 192..311 | 100 | <- | Minus |
| 2L | 13354102..13354217 | 78..191 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:46 Download gff for
UFO11976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13352226..13352633 | 810..1197 | 92 | <- | Minus |
| arm_2L | 13352801..13353210 | 400..809 | 100 | <- | Minus |
| arm_2L | 13353312..13353399 | 312..399 | 100 | <- | Minus |
| arm_2L | 13353715..13353834 | 192..311 | 100 | <- | Minus |
| arm_2L | 13354102..13354217 | 78..191 | 96 | | Minus |
