UFO11977.5prime Sequence
788 bp (668 high quality bases) assembled on 2012-06-29
> UFO11977.5prime
AATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTA
TAGCATACATTATACGAAGTTATCAGTCGACATGGTCAGTGTGGCCGTCG
GCACAGTTTCAACGGATATCCTGAATGGGCGCACATCATTCTTGTCCCTT
AGTCAGTCTCACGGGAGTGAAGTGGATTTGCCTTCGTTCTACGAAAGCTT
TAATCCAACTTTTCTTCCCAAGCTGCCTATCAGAAGATTTCCCCATATGC
TTGTGGGGGCATCAAATGAGCCTGAGATTTCGAAAAACCAGCCAGCAATT
CCACCATCTAGGCCAATTGAGCCAATATCTGAGGTGCCGTTTGTGGAACC
GGCCTTTGAGAAAAAATACTCTAGGACCCGTGGATTTAGCAAGGAATTGT
CCACACACAGGGATAATGAGAATGAATATATCGAGAGCACAGATGAGGTG
TCTCAGATGTTGAGCTTTACTAGCTATACGGATGAATATGATAGGGCAGA
ACCACTCATTACCAAAACGCAAAAGTTTTATAAAAAGAGATCCCCCTTGA
TTCCCAAATACGATTCCGAGGATTCATATGTGGTCCCTAAGGAAACCGAT
CAACAGGAATCGGGCCCGCTGATCGAATGCACCCCGTTCCACCACAGAGA
CTCATGAGATCAGTCTGTACGGGAATGCGAGTAATGACCAGACTGACGGG
TCCCTACAGATATGCAGCTCGCGTCACGTGAGAGTAATCCATGAGCGGTA
GGTCTCGAGATGTCGCGAGGGCGATAACACAAATGCCA
UFO11977.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:50:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12866-RC | 2809 | CG12866-RC | 197..729 | 82..614 | 2665 | 100 | Plus |
| CG12866-RB | 2806 | CG12866-RB | 194..726 | 82..614 | 2665 | 100 | Plus |
| CG12866-RE | 2810 | CG12866-RE | 194..726 | 82..614 | 2665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:50:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14668644..14669101 | 82..539 | 2290 | 100 | Plus |
| 2R | 25286936 | 2R | 14669268..14669343 | 539..614 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:50:40 has no hits.
UFO11977.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:18 Download gff for
UFO11977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12866-RC | 192..734 | 74..620 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:48 Download gff for
UFO11977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12866-RE | 189..731 | 74..620 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:21 Download gff for
UFO11977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12866-RE | 189..731 | 74..620 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:21 Download gff for
UFO11977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14668639..14669100 | 74..538 | 99 | -> | Plus |
| 2R | 14669268..14669348 | 539..620 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:48 Download gff for
UFO11977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10556144..10556605 | 74..538 | 99 | -> | Plus |
| arm_2R | 10556773..10556853 | 539..620 | 96 | | Plus |
