UFO11979.5prime Sequence
1151 bp (1054 high quality bases) assembled on 2012-06-29
> UFO11979.5prime
AATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTA
TAGCATACATTATACGAAGTTATCAGTCGACATGTCCATACAATTAGCGC
CACTGCATATACCCGCCATCCGGGCCGGTCCGGGATTCGAGACGGACACC
TCGGCGGCGGTCAAGCGGCACACGGCACACTGGGCCTACAACGACGAGGG
ATTCAATCAGCATTACGGCTCCGGGTACTACGACCGCAAGCACATGTTCG
CCTATCCTTACCCAGAAACGCAGTTTCCGGTTGGTCAGTACTGGGGCCCC
AACTACCGCCCCGATCAGACCACCTCTGCCGCAGCGGCGGCGGCCTACAT
GAACGAAGCGGAGCGCCACGTGAGCGCCGCCGCCCGACAGTCCGTCGAGG
GCACATCGACGTCCAGCTATGAGCCGCCCACCTACTCCTCGCCAGGCGGC
CTGCGCGGCTATCCCAGCGAGAACTACTCCAGCTCAGGAGCCTCTGGTGG
ATTATCCGTGGGAGCAGTGGGTCCTTGCACGCCCAATCCCGGACTGCACG
AGTGGACCGGTCAGGTGTCCGTCCGGAAAAAGCGCAAGCCGTACTCGAAG
TTCCAGACCCTGGAGCTGGAGAAGGAGTTTCTTTTCAATGCGTATGTTTC
CAAGCAAAAGCGCTGGGAATTGGCCAGAAATTTGCAGCTGACCGAGCGAC
AGGTCAAGATATGGTTCCAGAATCGGCGCATGAAGAACAAGAAGAACTCA
CAGCGCCAGGCCAATCAGCAGAACAACAACAACAATTCGAGCAGCAACCA
CAACCACGCGCAGGCGACCCAGCAGCACCACAGCGGCCACCACCTGAACC
TTAGCCTGAACATGGGTCACCATGCCGCCAAGATGCACCAGGCAAGCTTT
CTAGACCATTCGTTTGGCGCGCGGCCCAGGTAAGTGGTCATAATCATAAT
CATATCATAATCATATCACACTAGCCTAGAGATCCTGGTCATGACTAGTG
CTTGATCTCACCAATAAAAAACGCCCGCGCACGAGCGTCTGAACAATTCC
AGATGAGTCTGAGTCATTACTGATCTATCAACAGGAGTCAAGCGAGCTCG
ATTCCAAGTTACGCCCCGCTGCCACTCATCGAGTACTTTGTAATCCTAGC
A
UFO11979.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:50:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Abd-B-RG | 2537 | CG11648-RG | 9..818 | 82..891 | 4050 | 100 | Plus |
| Abd-B-RF | 2537 | CG11648-RF | 9..818 | 82..891 | 4050 | 100 | Plus |
| Abd-B-RE | 3703 | CG11648-RE | 712..1521 | 82..891 | 4050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:50:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16929636..16929856 | 704..484 | 1105 | 100 | Minus |
| 3R | 32079331 | 3R | 16931402..16931605 | 285..82 | 1020 | 100 | Minus |
| 3R | 32079331 | 3R | 16931115..16931317 | 488..286 | 1015 | 100 | Minus |
| 3R | 32079331 | 3R | 16929392..16929583 | 891..700 | 960 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 17:50:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2361..2547 | 718..904 | 169 | 59.6 | Plus |
UFO11979.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:19 Download gff for
UFO11979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Abd-B-RD | 715..1539 | 74..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:50 Download gff for
UFO11979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Abd-B-RB | 2208..3032 | 74..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:22 Download gff for
UFO11979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Abd-B-RE | 705..1529 | 74..899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:22 Download gff for
UFO11979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16929384..16929580 | 703..899 | 97 | <- | Minus |
| 3R | 16929638..16929852 | 488..702 | 100 | <- | Minus |
| 3R | 16931116..16931317 | 286..487 | 100 | <- | Minus |
| 3R | 16931402..16931612 | 74..285 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:50 Download gff for
UFO11979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12755106..12755302 | 703..899 | 97 | <- | Minus |
| arm_3R | 12755360..12755574 | 488..702 | 100 | <- | Minus |
| arm_3R | 12756838..12757039 | 286..487 | 100 | <- | Minus |
| arm_3R | 12757124..12757334 | 74..285 | 98 | | Minus |
