UFO11980.5prime Sequence
1142 bp (1055 high quality bases) assembled on 2012-06-29
> UFO11980.5prime
TGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCG
TATAGCATACATTATACGAAGTTATCAGTCGACATGCGCAAATTGGAGCA
TTGTAATATTGTGAAGCTTTTGTACTTTTTCTATTCGAGTGGTGAAAAGC
GTGATGAAGTATTTTTGAATTTAGTCCTCGAATATATACCAGAAACCGTA
TACAAAGTGGCTCGCCAATATGCCAAAACCAAGCAAACGATACCAATCAA
CTTTATTCGGCTCTACATGTATCAACTGTTCAGAAGTTTGGCCTACATCC
ACTCGCTGGGCATTTGCCATCGTGATATCAAGCCGCAGAATCTTCTGCTC
GATCCGGAGACGGCTGTGCTGAAGCTCTGTGACTTTGGCAGCGCCAAACA
GCTGCTGCACGGCGAGCCGAATGTATCGTATATCTGCTCCCGGTATTACC
GCGCCCCCGAGCTCATCTTTGGCGCCATCAATTATACAACAAAGATCGAT
GTCTGGAGTGCCGGTTGCGTTTTGGCCGAACTGCTGCTGGGCCAGCCCAT
CTTCCCTGGCGATTCCGGTGTGGATCAGCTCGTCGAGGTCATCAAGGTCC
TGGGCACACCGACAAGAGAACAGATACGCGAAATGAATCCAAACTACACG
GAATTCAAGTTCCCTCAGATTAAGAGTCATCCATGGCAGAAAGTTTTCCG
TATACGCACTCCTACAGAAGCTATCAACTTGGTGTCCCTGCTGCTCGAGT
ATACGCCCAGTGCCAGGATCACACCGCTCAAGGCCTGCGCACATCCGTTC
TTCGATGAGCTACGCATGGAGGGTAATCACACCTTGCCCAACGGTCGCGA
TATGCCGCCGCTGTTCAACTTCACAGAGCATGAGCTCTCAATACAGCCCA
GCCTAGTGCCGCAGTTGTTGCCCAAGCATCTGCAGAACGCATCCGGACCT
GCGGCATCGACCCTCGGCGGCGGAGCAGCCTCCATTGCGCCAGCGCTCCA
CAGCGTCTCGTCACGGGCAGTGGTGCCTCGGTGAGATCCGCCAGCACAGT
CGCAGGTACGGCAGCAGTTGCGATCGATCGGCGGAGCACAGCAGAACGGC
GGACGGATGCGTGACCCGATCTGTTACACAGTACACGCGACA
UFO11980.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:50:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sgg-RR | 5004 | CG5-RR | 1309..2349 | 84..1103 | 4680 | 97.8 | Plus |
sgg-RQ | 4499 | CG5-RQ | 2511..3551 | 84..1103 | 4680 | 97.8 | Plus |
sgg-RO | 2166 | CG2621-RO | 556..1596 | 84..1103 | 4680 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:50:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2671307..2671545 | 260..498 | 1195 | 100 | Plus |
X | 23542271 | X | 2671628..2671824 | 498..694 | 985 | 100 | Plus |
X | 23542271 | X | 2672914..2673103 | 693..882 | 950 | 100 | Plus |
X | 23542271 | X | 2671119..2671231 | 148..260 | 565 | 100 | Plus |
3R | 32079331 | 3R | 31373036..31373316 | 327..607 | 490 | 78.3 | Plus |
X | 23542271 | X | 2673174..2673332 | 882..1033 | 445 | 95.6 | Plus |
X | 23542271 | X | 2670192..2670257 | 84..149 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:50:46 has no hits.
UFO11980.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:19 Download gff for
UFO11980.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sgg-RH | 754..1755 | 84..1072 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:52 Download gff for
UFO11980.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sgg-RO | 556..1557 | 84..1072 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:23 Download gff for
UFO11980.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sgg-RO | 556..1557 | 84..1072 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:23 Download gff for
UFO11980.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2670192..2670257 | 84..149 | 100 | -> | Plus |
X | 2671121..2671231 | 150..260 | 100 | -> | Plus |
X | 2671308..2671545 | 261..498 | 100 | -> | Plus |
X | 2671629..2671822 | 499..692 | 100 | -> | Plus |
X | 2672914..2673103 | 693..882 | 100 | -> | Plus |
X | 2673175..2673360 | 883..1056 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:52 Download gff for
UFO11980.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2566947..2567136 | 693..882 | 100 | -> | Plus |
arm_X | 2564225..2564290 | 84..149 | 100 | -> | Plus |
arm_X | 2565154..2565264 | 150..260 | 100 | -> | Plus |
arm_X | 2565341..2565578 | 261..498 | 100 | -> | Plus |
arm_X | 2565662..2565855 | 499..692 | 100 | -> | Plus |
arm_X | 2567208..2567393 | 883..1056 | 93 | | Plus |