Clone UFO11980 Report

Search the DGRC for UFO11980

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:119
Well:80
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/Transcriptsgg-RO
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO11980.5prime Sequence

1142 bp (1055 high quality bases) assembled on 2012-06-29

> UFO11980.5prime
TGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCG
TATAGCATACATTATACGAAGTTATCAGTCGACATGCGCAAATTGGAGCA
TTGTAATATTGTGAAGCTTTTGTACTTTTTCTATTCGAGTGGTGAAAAGC
GTGATGAAGTATTTTTGAATTTAGTCCTCGAATATATACCAGAAACCGTA
TACAAAGTGGCTCGCCAATATGCCAAAACCAAGCAAACGATACCAATCAA
CTTTATTCGGCTCTACATGTATCAACTGTTCAGAAGTTTGGCCTACATCC
ACTCGCTGGGCATTTGCCATCGTGATATCAAGCCGCAGAATCTTCTGCTC
GATCCGGAGACGGCTGTGCTGAAGCTCTGTGACTTTGGCAGCGCCAAACA
GCTGCTGCACGGCGAGCCGAATGTATCGTATATCTGCTCCCGGTATTACC
GCGCCCCCGAGCTCATCTTTGGCGCCATCAATTATACAACAAAGATCGAT
GTCTGGAGTGCCGGTTGCGTTTTGGCCGAACTGCTGCTGGGCCAGCCCAT
CTTCCCTGGCGATTCCGGTGTGGATCAGCTCGTCGAGGTCATCAAGGTCC
TGGGCACACCGACAAGAGAACAGATACGCGAAATGAATCCAAACTACACG
GAATTCAAGTTCCCTCAGATTAAGAGTCATCCATGGCAGAAAGTTTTCCG
TATACGCACTCCTACAGAAGCTATCAACTTGGTGTCCCTGCTGCTCGAGT
ATACGCCCAGTGCCAGGATCACACCGCTCAAGGCCTGCGCACATCCGTTC
TTCGATGAGCTACGCATGGAGGGTAATCACACCTTGCCCAACGGTCGCGA
TATGCCGCCGCTGTTCAACTTCACAGAGCATGAGCTCTCAATACAGCCCA
GCCTAGTGCCGCAGTTGTTGCCCAAGCATCTGCAGAACGCATCCGGACCT
GCGGCATCGACCCTCGGCGGCGGAGCAGCCTCCATTGCGCCAGCGCTCCA
CAGCGTCTCGTCACGGGCAGTGGTGCCTCGGTGAGATCCGCCAGCACAGT
CGCAGGTACGGCAGCAGTTGCGATCGATCGGCGGAGCACAGCAGAACGGC
GGACGGATGCGTGACCCGATCTGTTACACAGTACACGCGACA

UFO11980.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:50:47
Subject Length Description Subject Range Query Range Score Percent Strand
sgg-RR 5004 CG5-RR 1309..2349 84..1103 4680 97.8 Plus
sgg-RQ 4499 CG5-RQ 2511..3551 84..1103 4680 97.8 Plus
sgg-RO 2166 CG2621-RO 556..1596 84..1103 4680 97.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:50:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2671307..2671545 260..498 1195 100 Plus
X 23542271 X 2671628..2671824 498..694 985 100 Plus
X 23542271 X 2672914..2673103 693..882 950 100 Plus
X 23542271 X 2671119..2671231 148..260 565 100 Plus
3R 32079331 3R 31373036..31373316 327..607 490 78.3 Plus
X 23542271 X 2673174..2673332 882..1033 445 95.6 Plus
X 23542271 X 2670192..2670257 84..149 330 100 Plus
Blast to na_te.dros performed on 2014-11-28 17:50:46 has no hits.

UFO11980.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:19 Download gff for UFO11980.5prime
Subject Subject Range Query Range Percent Splice Strand
sgg-RH 754..1755 84..1072 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:52 Download gff for UFO11980.5prime
Subject Subject Range Query Range Percent Splice Strand
sgg-RO 556..1557 84..1072 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:23 Download gff for UFO11980.5prime
Subject Subject Range Query Range Percent Splice Strand
sgg-RO 556..1557 84..1072 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:23 Download gff for UFO11980.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2670192..2670257 84..149 100 -> Plus
X 2671121..2671231 150..260 100 -> Plus
X 2671308..2671545 261..498 100 -> Plus
X 2671629..2671822 499..692 100 -> Plus
X 2672914..2673103 693..882 100 -> Plus
X 2673175..2673360 883..1056 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:52 Download gff for UFO11980.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2566947..2567136 693..882 100 -> Plus
arm_X 2564225..2564290 84..149 100 -> Plus
arm_X 2565154..2565264 150..260 100 -> Plus
arm_X 2565341..2565578 261..498 100 -> Plus
arm_X 2565662..2565855 499..692 100 -> Plus
arm_X 2567208..2567393 883..1056 93   Plus