UFO11981.5prime Sequence
1193 bp (1088 high quality bases) assembled on 2012-06-29
> UFO11981.5prime
TCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTT
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGATAGTCATCAAT
GCCTCTGACACGGGCCTTACCCTCACACCTGAAATGCTGTTGTCCACCTC
GGAATCATCGACCCACAGTGCCTCCGAGGTCGCCGGACGACTGCAGGTCG
ACGTGCGTACCGGCCTCAAATGGACAGAGGCCAAGTATCGTGCCAAGATC
ATCGGGCATAACGAGCTGCTGCTCGTGGCGGAGGATCCGACATGGAAAAA
GTACATTGAGCAGTTTAGGAACCCGCTAATTCTGCTGCTTCTTGGTTCTG
CTCTGGTGTCCGTAATCATGAAGCAGTTTGACGACGCCGTGAGCATAACC
ATTGCCATCCTAATTGTGGTCACGGTGGCCTTTATCCAGGAGTACCGCTC
CGAGAAGAGTCTGGAGGAGCTTAAGAAGCTGGTGCCCCCTGAATGCCACT
GCCTGCGGGAAGGTCGTCTAGACACATTCCTGGCACGCGAACTGGTTCCC
GGGGACATAGTGCACCTCAACGTGGGCGACCGGGTGCCGGCCGACGTGCG
TCTTTTCGAAGCTGTGGACCTATCTATCGACGAGAGCAGTTTTACCGGCG
AAACAGAGCCGGCGCGCAAAATTACTGATGTTTTGCTTAACAATACGAAC
GTAAAGGACCACAGCAACATGAAGAACATTGCCTTCATGGGCACTCTGGT
GCGATGTGGCAACGGGAAGGGCATAGTTGTCAGCACTGGGGAGCGCAGTG
AGTTCGGTGAGGTCTTCAAAATGATGCAGGCAGAGGAGGCTCCGAAGACG
CCACTGCAGAAGTCGATGGACATTCTAGGCGCTCAGTTGAGCTTCTACTC
CTTCCTGATTATCGGTGTCATCATGCTGCTGGGCTGGCTACAAGGTAAGC
CGCTTTCGGAAATGTTCAATATCAGCGTTTCACTGGCCGTTGCGGCCATC
CCCGAGGGCCTTCCTATCGTGTAACTGTGACTCTAGCGCTTGCGTATGCG
ATGCTAACCGAATTCAATCGTTAAAGCTGCCTACTGTGAGAACTTTGGCC
TGCATTACGTTATCTGCTCTGATAAGACCGGAACTTGGACAGACGGAAAT
GGACGGTCCACGATCTTCATCATCGACGATACCTGGCGGAACG
UFO11981.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:50:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SPoCk-RF | 4059 | CG50-RF | 558..1675 | 86..1190 | 5025 | 97.5 | Plus |
| SPoCk-RE | 4245 | CG32451-RE | 744..1861 | 86..1190 | 5025 | 97.5 | Plus |
| SPoCk-RA | 3659 | CG32451-RA | 181..1275 | 109..1190 | 4910 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:50:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22777111..22778150 | 110..1140 | 4670 | 98.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:50:49 has no hits.
UFO11981.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:20 Download gff for
UFO11981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SPoCk-RE | 737..1806 | 78..1141 | 98 | <- | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:55 Download gff for
UFO11981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SPoCk-RE | 737..1806 | 78..1141 | 98 | <- | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:24 Download gff for
UFO11981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SPoCk-RE | 737..1806 | 78..1141 | 98 | <- | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:24 Download gff for
UFO11981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22775114..22775137 | 86..109 | 100 | -> | Plus |
| 3L | 22777111..22778150 | 110..1140 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:55 Download gff for
UFO11981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22768214..22768237 | 86..109 | 100 | -> | Plus |
| arm_3L | 22770211..22771250 | 110..1140 | 98 | <- | Plus |
