UFO11982.5prime Sequence
1161 bp (1053 high quality bases) assembled on 2012-06-29
> UFO11982.5prime
AATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTATAGCATA
CATTATACGAAGTTATCAGTCGACATGCCTGATATGATGCCAATGGCTAA
TTCATTCAATCCACTCATTAACATAAATCAGGAAGCGGGTGTGGTAATTA
ACACAGGAATAAATTCAATAGACAATGGACTACCAAGTACATACAGTGAA
CACATATCTCAGCCAACTAATACAGAATCTACAAGGAATATGAATTCTTC
AATTTTTGATATTCCCAGCGATCTAGACAATAATTCTTCAAATGAGTCTG
GCGATGAAGTAACTCAGCCCACTGCTAAACAATCTAAAATAAATGCGAAT
TTTGTTTGTAAAATAGAAAGCGATACAAACATGGATAAATTACCAACTAC
GTCCAATAATACAAACGACAAGCCGCCAAATAACACAGATTCTGATTCGG
ATATTATTTCAATTTCTGATTTAATTGAAGATTTAAATTTGGATTTTAAT
CAACTACCGATTACCTCTTGTGACGTAGAAACCCATCCAGCAGACACACA
ATCTAATATCGATGCTAATTTGCCATATGATTTGATAAGTGCCATAAATA
TGGACTTTGTCAATCCAGCTAACAGAACATATATGTCAGCTGCCAATTCA
ACACGAGGAACCGCCTACAAGATTAGAAAGCCCCGGACGGTCAAGAGAAT
CATTAAGGCGCCATCAAAGTCCAACATTGGAAAGTTGTTGAGGGAAGCTG
CCAAGAAAGAAAATGCGGCTGCGGGAACGCAGAGACCGAAGAAGCCACGT
CGACGATAACATCTTCAGTTCAAAACTTTCCAAATCCCAATAATGGGCCT
GCATGCCCATTTCCGATGCAGAACGGCACTATGCCAGCAGATGAACCCAA
TGACTTAATGCCAACGGTTTCGCAAAGTCTAACAGTGCCAGCTGCTCAAA
ATCGTCCAATACAACATCGGAAAGATTATTAAGCCTCCTGTCAAGCGACT
TACCGAGAGAGCATAGACCATAATACAATATACCAAATAAATAGTACTGG
GGTCAATACAGTCTAATGGAGTGCACTACAATACGACAAGACTTGTAAAG
CCGGCGAACTTACATTCTGATGCTATGAATAGGCAAAATCCATGTGTCTG
TTGCTGAAATT
UFO11982.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:50:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2861-RE | 5967 | CG2861-RE | 507..1611 | 75..1159 | 4865 | 97.2 | Plus |
| CG2861-RD | 5932 | CG2861-RD | 507..1611 | 75..1159 | 4865 | 97.2 | Plus |
| CG2861-RC | 2875 | CG2861-RC | 376..1480 | 75..1159 | 4865 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:50:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4802409..4803334 | 997..75 | 4470 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:50:22 has no hits.
UFO11982.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:14 Download gff for
UFO11982.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2861-RC | 370..1482 | 66..1161 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:37 Download gff for
UFO11982.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2861-RC | 370..1482 | 66..1161 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:11 Download gff for
UFO11982.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2861-RC | 370..1482 | 66..1161 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:11 Download gff for
UFO11982.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4802228..4803340 | 66..1161 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:37 Download gff for
UFO11982.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4696261..4697373 | 66..1161 | 96 | | Minus |
