UFO11983.5prime Sequence
1170 bp (1040 high quality bases) assembled on 2012-06-29
> UFO11983.5prime
CTCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACT
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGACAAGGTCTT
TGCCGGCAACAGTGCGCGCAAGGACAAGTTCGATGTAAACACCTTCCAGG
ACAACTCCCAGCTGCCCATTGGATCCCGCAAGAAGAATAGCATCCGCACA
AACGATCTGAACATCGAGGAGGACTCGGAGTACGAGAGCCAAACGGAGCC
ATTGAATAATGCACAAAACTATGATGACATCCCCGAAGACTTCCCGCTAG
TCTCGGAGAGAGCCGGACACGGCGATCACTCGGACAACTCGGTGGACGAG
AAGCACGTCCAGTTTGGCGGCAAAAAGAAGATCCCGCCCAGTTTGAGCTA
TGATGAACAGCCCACGGACCAATCGCACGAACGTAAACGCAGAAGAAGCC
GCCATCAGTATTATAGACAACGTAAATTCTCACATCAGGACAGCGTGGAA
CCCAAAAACAAGCTCGAGGAAAACGGTGATGCAGGTGCGCGTCGCATCTC
TGTGCAGCCTGAGGACACGGCATTGGAGGAGGCTGATCTTAACGAGCTGA
GATCACATCGTTCGGACGACCCGCGTGCCCTGCGCCGCCATAAGATCCAT
CACTCATCCATCAAGTTGCGCGAGTTGCCCCAAATAACGATTTCCCCCTT
CACCAACAAGAAGCCCGAGGTGGATCATAGTCCTCATGAGATCTTTGTGC
AATTGGATGAGCTCACAGGCGTGGGCGAGGATCGCGAATGGAAAGAGACG
GCCCGTTGGATCAAGTATGAGGAGGACGTGGAGGAGGGCTCCGATCGTTG
GGGCAAGCCCCATGTTGCCTCCCTCTCCTTCCACTCGCTGCTCAATTTGC
GTCGCTGCCTGAAACGGGCGTTGTCCTGCTCGATCTTAACGAGAAGGACC
TGCCTGCCGTACTATCGCGTGTAGACAGATGGTGATCGAGGACCTGATTG
ACATCAATGACAAGCCATCGGTGATGCGTTCGCTGCTCTGCGCATCGCAA
TGTCAACGAACACCATGTGTGCTGCCTCACAGAGAATGACAACAGCTACC
AGCTGCAGGTGAAATCACCCTATGCGATATCATCATCAATGTTTCGCTAA
CCCCGAGCCATTCTTGTCAT
UFO11983.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:50:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8177-RL | 1450 | CG8177-RL | 263..1373 | 87..1170 | 4825 | 96.8 | Plus |
CG8177-RH | 4869 | CG8177-RH | 464..1489 | 87..1099 | 4745 | 98.1 | Plus |
CG8177-RE | 5099 | CG8177-RE | 263..1288 | 87..1099 | 4745 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:50:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9779652..9779907 | 193..448 | 1280 | 100 | Plus |
3L | 28110227 | 3L | 9780764..9780986 | 739..960 | 1050 | 99.1 | Plus |
3L | 28110227 | 3L | 9780534..9780697 | 577..740 | 820 | 100 | Plus |
3L | 28110227 | 3L | 9780121..9780253 | 447..579 | 665 | 100 | Plus |
3L | 28110227 | 3L | 9779488..9779593 | 87..192 | 530 | 100 | Plus |
3L | 28110227 | 3L | 9781075..9781166 | 976..1065 | 345 | 96.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:50:25 has no hits.
UFO11983.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:15 Download gff for
UFO11983.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8177-RF | 947..1947 | 84..1076 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:38 Download gff for
UFO11983.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8177-RL | 260..1248 | 84..1065 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:13 Download gff for
UFO11983.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8177-RL | 260..1248 | 84..1065 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:13 Download gff for
UFO11983.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9779485..9779593 | 84..192 | 99 | -> | Plus |
3L | 9779652..9779907 | 193..448 | 100 | -> | Plus |
3L | 9780123..9780252 | 449..578 | 100 | -> | Plus |
3L | 9780536..9780697 | 579..740 | 100 | -> | Plus |
3L | 9780766..9781008 | 741..978 | 97 | -> | Plus |
3L | 9781078..9781172 | 979..1070 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:38 Download gff for
UFO11983.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9773223..9773352 | 449..578 | 100 | -> | Plus |
arm_3L | 9772585..9772693 | 84..192 | 99 | -> | Plus |
arm_3L | 9772752..9773007 | 193..448 | 100 | -> | Plus |
arm_3L | 9773636..9773797 | 579..740 | 100 | -> | Plus |
arm_3L | 9773866..9774108 | 741..978 | 97 | -> | Plus |
arm_3L | 9774178..9774272 | 979..1070 | 94 | -> | Plus |