Clone UFO11983 Report

Search the DGRC for UFO11983

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:119
Well:83
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG8177-RL
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO11983.5prime Sequence

1170 bp (1040 high quality bases) assembled on 2012-06-29

> UFO11983.5prime
CTCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACT
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGACAAGGTCTT
TGCCGGCAACAGTGCGCGCAAGGACAAGTTCGATGTAAACACCTTCCAGG
ACAACTCCCAGCTGCCCATTGGATCCCGCAAGAAGAATAGCATCCGCACA
AACGATCTGAACATCGAGGAGGACTCGGAGTACGAGAGCCAAACGGAGCC
ATTGAATAATGCACAAAACTATGATGACATCCCCGAAGACTTCCCGCTAG
TCTCGGAGAGAGCCGGACACGGCGATCACTCGGACAACTCGGTGGACGAG
AAGCACGTCCAGTTTGGCGGCAAAAAGAAGATCCCGCCCAGTTTGAGCTA
TGATGAACAGCCCACGGACCAATCGCACGAACGTAAACGCAGAAGAAGCC
GCCATCAGTATTATAGACAACGTAAATTCTCACATCAGGACAGCGTGGAA
CCCAAAAACAAGCTCGAGGAAAACGGTGATGCAGGTGCGCGTCGCATCTC
TGTGCAGCCTGAGGACACGGCATTGGAGGAGGCTGATCTTAACGAGCTGA
GATCACATCGTTCGGACGACCCGCGTGCCCTGCGCCGCCATAAGATCCAT
CACTCATCCATCAAGTTGCGCGAGTTGCCCCAAATAACGATTTCCCCCTT
CACCAACAAGAAGCCCGAGGTGGATCATAGTCCTCATGAGATCTTTGTGC
AATTGGATGAGCTCACAGGCGTGGGCGAGGATCGCGAATGGAAAGAGACG
GCCCGTTGGATCAAGTATGAGGAGGACGTGGAGGAGGGCTCCGATCGTTG
GGGCAAGCCCCATGTTGCCTCCCTCTCCTTCCACTCGCTGCTCAATTTGC
GTCGCTGCCTGAAACGGGCGTTGTCCTGCTCGATCTTAACGAGAAGGACC
TGCCTGCCGTACTATCGCGTGTAGACAGATGGTGATCGAGGACCTGATTG
ACATCAATGACAAGCCATCGGTGATGCGTTCGCTGCTCTGCGCATCGCAA
TGTCAACGAACACCATGTGTGCTGCCTCACAGAGAATGACAACAGCTACC
AGCTGCAGGTGAAATCACCCTATGCGATATCATCATCAATGTTTCGCTAA
CCCCGAGCCATTCTTGTCAT

UFO11983.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:50:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG8177-RL 1450 CG8177-RL 263..1373 87..1170 4825 96.8 Plus
CG8177-RH 4869 CG8177-RH 464..1489 87..1099 4745 98.1 Plus
CG8177-RE 5099 CG8177-RE 263..1288 87..1099 4745 98.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:50:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9779652..9779907 193..448 1280 100 Plus
3L 28110227 3L 9780764..9780986 739..960 1050 99.1 Plus
3L 28110227 3L 9780534..9780697 577..740 820 100 Plus
3L 28110227 3L 9780121..9780253 447..579 665 100 Plus
3L 28110227 3L 9779488..9779593 87..192 530 100 Plus
3L 28110227 3L 9781075..9781166 976..1065 345 96.7 Plus
Blast to na_te.dros performed on 2014-11-28 17:50:25 has no hits.

UFO11983.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:15 Download gff for UFO11983.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8177-RF 947..1947 84..1076 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:38 Download gff for UFO11983.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8177-RL 260..1248 84..1065 98 == Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:13 Download gff for UFO11983.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8177-RL 260..1248 84..1065 98 == Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:13 Download gff for UFO11983.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9779485..9779593 84..192 99 -> Plus
3L 9779652..9779907 193..448 100 -> Plus
3L 9780123..9780252 449..578 100 -> Plus
3L 9780536..9780697 579..740 100 -> Plus
3L 9780766..9781008 741..978 97 -> Plus
3L 9781078..9781172 979..1070 94 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:38 Download gff for UFO11983.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9773223..9773352 449..578 100 -> Plus
arm_3L 9772585..9772693 84..192 99 -> Plus
arm_3L 9772752..9773007 193..448 100 -> Plus
arm_3L 9773636..9773797 579..740 100 -> Plus
arm_3L 9773866..9774108 741..978 97 -> Plus
arm_3L 9774178..9774272 979..1070 94 -> Plus