UFO11984.5prime Sequence
1174 bp (1064 high quality bases) assembled on 2012-06-29
> UFO11984.5prime
GAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGT
ATAGCATACATTATACGAAGTTATCAGTCGACATGGAGAACGTTTCCAAG
ATTTGGCTGGGTCCCCTGCCCCAGGATTCGCCGTACGTAAAGCCCTTCCG
GCTGTACTACGTCCAGAATGGCGTGGAGAAGAACTGGGACCTGCTGAAGG
TCCACGATAGTGTGGCTATTATCTTGTACAACACTTCTCGCCAGAAACTG
GTCCTGGTCCGCCAGTTCCGACCCGCCGTCTACCACGGCATCATCTCCAG
CGCCAAGGGCACCTTCGATGAGGTGGACCTCAAGGAGTTCCCGCCCGCCA
TCGGTGTCACCTTGGAACTGTGCGCCGGCATCGTGGACAAAAACAAAAGC
TGGGTGGAAATCGCTCGGGAGGAAGTGGTCGAGGAGTGTGGCTACGATGT
GCCCGTGGAACGCATTGAGGAAGTCATGGTCTACAGATCTGGAGTTGGTT
CATCGGGTGCCAAGCAGACCATGTACTACTGCGAGGTGACCGATGCGGAC
AAGGCCACAGGTGGTGGCGGCGTCGACGACGAGATCATCGAGGTGGTGGA
GCTGTCCCTGGAGGAGGCCAAGCGGATGATCCAACAGGGAGCCGTCAACA
ACAGCCCGCCCAGCTGCCTGATGGGCCTGATGTGGTTCTTCGCCAACAGG
GCACCCGGTGCGAAGGCCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCG
GGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACA
ACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATA
AAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTC
TGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCA
AATTACGCCCCGCCCTGCCACCTCATCGCAGTACTGTTGTAATTCATTAG
CATTCTGCCGAAATGGAAAGCCATCCACAAACGGCATGATGAACTTGAAT
CGCCAGGCGGCCATCAGTGCTGTCGCCTTGGCGTATAATATATTGCCAAT
GGGTGAACGGGGGCGAAGAAGTGGTCCATATTGGCCACGTTAATCAAACT
TGTGAAACTCTCACCAGGGAATTG
UFO11984.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:50:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42813-RA | 957 | CG31063-RA | 51..687 | 82..718 | 3185 | 100 | Plus |
| CG42813-RB | 1366 | CG42813-RB | 90..726 | 82..718 | 3185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:50:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27228068..27228472 | 486..82 | 2025 | 100 | Minus |
| 3R | 32079331 | 3R | 27227710..27227944 | 718..484 | 1175 | 100 | Minus |
| 3L | 28110227 | 3L | 15100462..15100643 | 665..484 | 685 | 91.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:50:28 has no hits.
UFO11984.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:15 Download gff for
UFO11984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42813-RA | 47..687 | 74..718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:40 Download gff for
UFO11984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42813-RA | 47..687 | 74..718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:14 Download gff for
UFO11984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42813-RB | 86..726 | 74..718 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:14 Download gff for
UFO11984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27227710..27227941 | 487..718 | 100 | <- | Minus |
| 3R | 27228068..27228476 | 74..486 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:40 Download gff for
UFO11984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23053432..23053663 | 487..718 | 100 | <- | Minus |
| arm_3R | 23053790..23054198 | 74..486 | 99 | | Minus |
