UFO11985.5prime Sequence
1157 bp (1000 high quality bases) assembled on 2012-06-29
> UFO11985.5prime
GAACTCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATA
ACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAATCATCC
AATACTCTACTCGTATTGGCGCAGCTCGTGCTCCTGGCGCGTGCGCATTG
CGATGAACCTGAAGGAGATACCCTACGACATCAAGCCGATCAGCCTGATC
AAATCCGGTGGCGAGCAGCACTGCAATGAGTACCGCGAGGTGAATCCAAT
GGAGCAGGTGCCCGCCCTACAGATTGATGGACACACCCTCATCGAATCGG
TAGCCATAATGCACTACCTGGAGGAAACACGTCCCCAGCGACCACTCCTG
CCACAGGACGTCCACAAGCGGGCCAAGGTGCGCGAAATAGTCGAGATCAT
TTGCTCTGGCATCCAGCCCCTGCAGAACCTCATCGTGCTCATCCATGTGG
GCGAGGAGAAGAAGAAGGAGTGGGCCCAGCACTGGATTACACGAGGCTTC
CGGGCGGTTGAGAAGGCGCTGTCCACTTCGGCCGGCAAATATTGCGTGGG
CGATGAGATCTCCATGGCGGACTGCTGCCTCGTACCTCAGGTGTTCAATG
CCCGAAAAAATTCCACGTCAACTTGCGACCGTATCCCATAATTCTGCGCA
TCGATCGCGAACTGGAGAGCAATCCGGCATTCCGGGCGGCCCATCCCTCC
AATCAACCGGACTGTCCGCCGGAGCTGCCCAACAAAGCAAGCTTTCTAGA
CCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATA
ATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTG
CTTGATTCTCACCAATAAAAACGCCCGGCGGCAACCGAGCGTCTGACAAT
CAGATGAGTCTGAGTCATACTGATCATCACAGATCAGCGAGTCGATCAAT
ACCCCCCTGCATCTCCATATGTGATCTACATCGCATGACTCAACGAGTGA
CTGATCCACGACGCTGCCTGTAATGCTGACGGCAAATGCATGCTACATGA
TCCGTGGAAAATCACTGATCGTCACCTGATGACGACGTCAGATTTGAGAG
ACACCTCACATCGAAGAGTCATCGTACAGTCGCGTCCATATTTGGTAATC
GACTATT
UFO11985.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:51:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GstZ2-RC | 1093 | CG9363-RC | 40..685 | 89..736 | 3170 | 99.4 | Plus |
| GstZ2-RA | 1062 | CG9363-RA | 75..710 | 99..736 | 3120 | 99.4 | Plus |
| GstZ2-RB | 2202 | CG9363-RB | 383..1018 | 99..736 | 3120 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:50:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9458204..9458534 | 606..276 | 1655 | 100 | Minus |
| 3R | 32079331 | 3R | 9458595..9458772 | 276..99 | 890 | 100 | Minus |
| 3R | 32079331 | 3R | 9457999..9458125 | 736..610 | 620 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:50:59 has no hits.
UFO11985.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:22 Download gff for
UFO11985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9363-RC | 34..679 | 89..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:59 Download gff for
UFO11985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstZ2-RC | 40..685 | 89..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:30 Download gff for
UFO11985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstZ2-RC | 40..685 | 89..736 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:30 Download gff for
UFO11985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9457999..9458125 | 610..736 | 99 | <- | Minus |
| 3R | 9458199..9458533 | 277..609 | 99 | <- | Minus |
| 3R | 9458595..9458782 | 86..276 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:59 Download gff for
UFO11985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5283721..5283847 | 610..736 | 99 | <- | Minus |
| arm_3R | 5283921..5284255 | 277..609 | 99 | <- | Minus |
| arm_3R | 5284317..5284504 | 86..276 | 97 | | Minus |
