UFO11986.5prime Sequence
682 bp (569 high quality bases) assembled on 2012-06-29
> UFO11986.5prime
CTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTC
GTATAGCATACATTATACGAAGTTATCAGTCGACATGACCGACAGCATCG
CTGTGGACGACGGAGGAGTGGATGAGTGTTGCGACTCCATCACCGAGCTG
CCCAGCGCCTCGTTCCAGCTCCAGCATCTGGTCAAAGGACGTCCGAAGCG
GGCCAAAACGCGTGCACCAACTCGGCCGTTGGTCACCACCGAGTGCGCCG
GGGGCAGCAGGGAAATTGGCGAAGGTTTGGAACACTTCTTCCGGCCCGGT
TCTGTTACGCCCACTACCCTGACTCCCCTAGTTTCTCCAACGTCGGAGGA
ATGCAGCTCCTTGTCGTTTGTGGACAGTCCCACGATGAGCCGCGATGGGA
ATGGACATATGACCTCCGAGGAGACCACTCCCATTCTGGAGGAACGCCGA
CCAATTAAATTGGAGCGCCAGTCGCCATTGCTCAAAAGTGCGTCATGGGC
CACCCGCCTCCCGGTCCACGACAATCTAGAAGAAGTATTCGCCACTGGTG
GGTCGTAAGTCCCCCGCTGGTCAGATGCGAACTGAAGAGTCCCGGCTCGG
GATCTGCCACCGGTGCTGAGGAGAACGTCTATGCCAGGTTTTATTCTGCT
AGGCAACCGCCCGAGAAGGACAAAACGCCGTT
UFO11986.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:51:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1399-RG | 5298 | CG1399-RG | 3655..4249 | 85..678 | 2675 | 97.5 | Plus |
| CG1399-RF | 6319 | CG1399-RF | 3739..4333 | 85..678 | 2675 | 97.5 | Plus |
| CG1399-RD | 2893 | CG1399-RD | 313..907 | 85..678 | 2675 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:51:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7679340..7679744 | 489..85 | 2025 | 100 | Minus |
| 2R | 25286936 | 2R | 7679081..7679276 | 678..484 | 435 | 91.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:51:03 has no hits.
UFO11986.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:22 Download gff for
UFO11986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1399-RB | 2968..3565 | 85..682 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:01 Download gff for
UFO11986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1399-RD | 313..910 | 85..682 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:31 Download gff for
UFO11986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1399-RD | 313..910 | 85..682 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:31 Download gff for
UFO11986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7679078..7679272 | 488..682 | 92 | <- | Minus |
| 2R | 7679342..7679744 | 85..487 | 100 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:01 Download gff for
UFO11986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3566583..3566777 | 488..682 | 92 | <- | Minus |
| arm_2R | 3566847..3567249 | 85..487 | 100 | == | Minus |
