UFO11987.5prime Sequence
1155 bp (1048 high quality bases) assembled on 2012-06-29
> UFO11987.5prime
GAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGT
ATAGCATACATTATACGAAGTTATCAGTCGACATGGATGCCATCAAGAAG
AAGATGCAAGCGATGAAAGTCGACAAGGACGGAGCTCTGGAGCGCGCTCT
CGTCTGCGAGCAGGAGGCACGCGATGCTAACACCCGCGCCGAGAAGGCCG
AGGAGGAGGCTCGCCAGCTGCAGAAGAAGATCCAGACCGTTGAGAACGAG
CTGGATCAGACCCAGGAAGCCCTGACCCTGGTCACCGGCAAGCTGGAGGA
GAAGAACAAGGCTCTGCAGAACGCCGAATCCGAGGTTGCCGCTCTGAACC
GTCGCATCCAGTTGCTCGAAGAAGACTTGGAGCGCTCTGAGGAGCGTCTG
GGCTCCGCCACAGCCAAGCTGTCGGAAGCCTCTCAGGCCGCCGATGAGAG
CGAACGGATACGAAAAGCGCTTGAGAATCGCACAAATATGGAAGATGACA
AAGTAGCTCTCTTGGAGAACCAGTTAGCGCAAGCAAAATTAATTGCAGAA
GAAGCTGATAAGAAATACGAAGAGGTGGCCAGAAAACTCGTGCTCATGGA
ACAGGATCTGGAGCGTTCCGAGGAGAAGGTCGAGCTCAGCGAAAGCAAAA
TTGTGGAGCTTGAGGAGGAGCTGCGCGTGGTTGGCAACAACCTGAAGTCC
CTGGAAGTCTCTGAGGAGAAGGCCAACCAACGTGAGGAGGAGTACAAGAA
CCAGATCAAGACCCTCAACACCCGTCTAAAGGAGGCTGAGGCTCGTGCTG
AGTTCGCTGAACGCTCCGTTCAGAAATTGCAGAAGGAAGTCGACAGGCTC
GAAGACGACCTCGTCCTGAGAAAGAGCGCTACAAGGACATCGGAGACGAT
CTCGACACCGCCTTCGTCGAGCTCATCCTCAAGGAAGCAAGCTTTCTAGA
CCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGTCATATCATAATCATAAT
CATATCATAATCACAACTAGCCTAGAGATCCTGTCATGACTAGTGCTTGA
TTCCTCACCAATAAAAACGCCGCGCAACGGAGCGTTCTGAACAATCAGAA
TGGAGTTCTGAGTCATACTGAATCTATCAAGTATGAAGCGGCTCGTATAT
CCAAT
UFO11987.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:51:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tm1-RN | 1253 | CG4898-RN | 88..945 | 80..936 | 4250 | 99.8 | Plus |
| Tm1-RS | 1253 | CG4898-RS | 88..945 | 80..936 | 3845 | 96.6 | Plus |
| Tm1-RL | 2194 | CG4898-RL | 88..869 | 80..861 | 3475 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:51:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15295113..15295247 | 323..457 | 675 | 100 | Plus |
| 3R | 32079331 | 3R | 15285227..15285355 | 195..323 | 645 | 100 | Plus |
| 3R | 32079331 | 3R | 15295426..15295546 | 456..576 | 605 | 100 | Plus |
| 3R | 32079331 | 3R | 15284646..15284763 | 80..197 | 590 | 100 | Plus |
| 3R | 32079331 | 3R | 15300745..15300823 | 644..722 | 395 | 100 | Plus |
| 3R | 32079331 | 3R | 15300104..15300180 | 569..645 | 370 | 98.7 | Plus |
| 3R | 32079331 | 3R | 15303151..15303222 | 783..854 | 360 | 100 | Plus |
| 3R | 32079331 | 3R | 15307588..15307672 | 853..936 | 360 | 97.6 | Plus |
| 3R | 32079331 | 3R | 15301009..15301074 | 720..785 | 330 | 100 | Plus |
| 3R | 32079331 | 3R | 15313115..15313197 | 683..765 | 220 | 84.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:51:06 has no hits.
UFO11987.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:23 Download gff for
UFO11987.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RN | 104..968 | 75..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:03 Download gff for
UFO11987.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RN | 86..950 | 75..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:32 Download gff for
UFO11987.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RN | 86..950 | 75..942 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:32 Download gff for
UFO11987.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15300747..15300822 | 646..721 | 100 | -> | Plus |
| 3R | 15301011..15301073 | 722..784 | 100 | -> | Plus |
| 3R | 15303153..15303222 | 785..854 | 100 | -> | Plus |
| 3R | 15307590..15307677 | 855..942 | 95 | == | Plus |
| 3R | 15284644..15284762 | 75..196 | 97 | -> | Plus |
| 3R | 15285229..15285354 | 197..322 | 100 | -> | Plus |
| 3R | 15295113..15295246 | 323..456 | 100 | -> | Plus |
| 3R | 15295427..15295544 | 457..574 | 100 | -> | Plus |
| 3R | 15300110..15300180 | 575..645 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:03 Download gff for
UFO11987.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11120835..11120968 | 323..456 | 100 | -> | Plus |
| arm_3R | 11121149..11121266 | 457..574 | 100 | -> | Plus |
| arm_3R | 11125832..11125902 | 575..645 | 100 | -> | Plus |
| arm_3R | 11126469..11126544 | 646..721 | 100 | -> | Plus |
| arm_3R | 11126733..11126795 | 722..784 | 100 | -> | Plus |
| arm_3R | 11128875..11128944 | 785..854 | 100 | -> | Plus |
| arm_3R | 11133312..11133399 | 855..942 | 95 | == | Plus |
| arm_3R | 11110951..11111076 | 197..322 | 100 | -> | Plus |
| arm_3R | 11110366..11110484 | 75..196 | 97 | -> | Plus |
