UFO11991.5prime Sequence
1168 bp (1061 high quality bases) assembled on 2012-06-29
> UFO11991.5prime
CTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTC
GTATAGCATACATTATACGAAGTTATCAGTCGACATGACACGCGGCAACC
AACGAGACCTGGCCCGCCAGAAGAACCAGAAGAAGCAGGCGGATTTGACC
AAGGGAAAGCGAACCGATAACCTCACCGTGGAGCAAAGGAAGGCCAGGGA
CGCTGAGTTAATGCGGGAGAAGCAGAAAAAAAAGGAAGAGGCCGCTGCGG
CGGGCACAAGCAAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCC
CAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTA
GCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAA
ACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAG
GTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATT
ACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATT
CTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAG
CGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAA
CGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTG
AAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCC
TTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAAT
ATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGAT
GAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACT
ATCCCATATCACCAGCTCACCGTCTTTCATTGCCATACGAATTCCCGGAT
GAGCATTCATCAGCGGGCAAGAATGTGAATAAGGCCGGATAAACTTGTGC
TTATTTTTCTTACGGTCTTTAAAAGGCCGTATATCCAGCTGACGGTCTGT
TATAGGTACATTGAGTAACTGACTGAATGCCTCAAATGTTCTTTACGATG
CATGGATATATCACGGGGTAATCCAGTGAATTTTTTCCATTAAGCTGTAG
CTCTGGACATCCTAACTT
UFO11991.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:51:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17931-RD | 1367 | CG17931-RD | 178..357 | 85..264 | 900 | 100 | Plus |
| CG17931-RC | 1081 | CG17931-RC | 178..357 | 85..264 | 900 | 100 | Plus |
| CG17931-RA | 762 | CG17931-RA | 178..357 | 85..264 | 900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:51:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16358682..16358788 | 198..92 | 535 | 100 | Minus |
| 3R | 32079331 | 3R | 16358545..16358614 | 264..195 | 350 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 17:51:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 833..900 | 123 | 68.1 | Plus |
UFO11991.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:24 Download gff for
UFO11991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17931-RA | 176..355 | 85..264 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:08 Download gff for
UFO11991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17931-RA | 178..357 | 85..264 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:35 Download gff for
UFO11991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17931-RA | 178..357 | 85..264 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:35 Download gff for
UFO11991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16358545..16358611 | 198..264 | 100 | <- | Minus |
| 3R | 16358683..16358788 | 92..197 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:08 Download gff for
UFO11991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12184267..12184333 | 198..264 | 100 | <- | Minus |
| arm_3R | 12184405..12184510 | 92..197 | 100 | | Minus |
