UFO11993.5prime Sequence
1161 bp (1075 high quality bases) assembled on 2012-06-29
> UFO11993.5prime
CTCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACT
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTACCAGCTGGA
GAAGATCTGGGTCCTGCTGTGCCTGGCCCTCGTCGGTGTCCTTGGCTTCG
GCCAGTTCCACATGAAGCACTATCAGCTGCAGCGTAACTACAATACGCAG
GAGGATTCCGGCGAGAATGACAATAGTGTGCTGCGAACCTTTCGCCGCTG
CATGTGGGAGCAGTCGAAGTTTCTGCCCCGCCGCCTCGTCCTTTTGAGCC
TGTGCTCGAATCTCTTCTGCGAGAACAATCACATAATGCCCCGTTCCAGC
TGCCTGGACATCCTGCCCGAGCAATGCGAGCAGGGCGATGAGGAGGAGCT
GATGTACAAGCCCTTCCCCGACTGCTGTCCGGTTTATTGCAACCTGAAGC
GTCGGATGCAGCGCCTGCGCACCATGCACTTCCGGCACCGCCTGCTGCGC
AACAAACAGGACGGCTCAGCGGGATCCGCTGGCGGTGGATCCGCTGGTGG
CGACGGTCCCAATAACTCGCTCCTCAGTGAGTTTGTCTACAACAACTACG
CAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCAT
AATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTG
GTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAAC
CGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCT
ATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCC
ACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAG
CCATCACAAACGGCATGATGACCTGATCGCCAGCGGCATCAGCACCTTGT
CGCCTTGCGTATATATTTGCCCATGGTGAAAACGGGGGCGAGAGTGTCAT
ATTGCCACGTTTAAATCAAACTGGTGAACTCACCCAGGGGATGCTGAAAC
GAAAACATATTCTCATAACCCTTAGGAAATAGCAGTTCACCGTAACCCGC
CCAATCTGCAATAATATGTGTAGAACTGCCGGAATCGGTCTGCATTACTC
GAACGAGAACG
UFO11993.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:51:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1552-RB | 798 | CG1552-RB | 28..544 | 83..599 | 2570 | 99.8 | Plus |
| CG1552-RC | 1060 | CG1552-RC | 68..334 | 83..349 | 1320 | 99.6 | Plus |
| CG1552-RA | 837 | CG1552-RA | 28..294 | 83..349 | 1320 | 99.6 | Plus |
| CG1552-RC | 1060 | CG1552-RC | 374..623 | 350..599 | 1250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:51:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11052608..11052862 | 599..345 | 1275 | 100 | Minus |
| X | 23542271 | X | 11053337..11053489 | 235..83 | 750 | 99.3 | Minus |
| X | 23542271 | X | 11053073..11053187 | 349..235 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:51:16 has no hits.
UFO11993.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:25 Download gff for
UFO11993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1552-RB | 24..544 | 78..599 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:10 Download gff for
UFO11993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1552-RB | 24..544 | 78..599 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:36 Download gff for
UFO11993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1552-RB | 24..544 | 78..599 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:36 Download gff for
UFO11993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11052608..11052857 | 350..599 | 100 | <- | Minus |
| X | 11053073..11053187 | 235..349 | 100 | <- | Minus |
| X | 11053338..11053489 | 79..234 | 96 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:10 Download gff for
UFO11993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10946641..10946890 | 350..599 | 100 | <- | Minus |
| arm_X | 10947106..10947220 | 235..349 | 100 | <- | Minus |
| arm_X | 10947371..10947522 | 79..234 | 96 | -> | Minus |
