UFO11994.5prime Sequence
1150 bp (1052 high quality bases) assembled on 2012-06-29
> UFO11994.5prime
CTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTC
GTATAGCATACATTATACGAAGTTATCAGTCGACATGCGACGGGAGCGAG
TGGTGCTGCTGTGCCTGGCGCTGCTCGGATTGCAGCAGGTGTCCAGGGCC
ACTCTGCGTCAGTCGCGCGAAATCATCATCACAGATGCGGTGCGGCGCAT
CCAGAACGACGGCTACAACGTGGAGCGCCACTCGGTGACGACGAAGGACG
GATATGTGCTCACCCTGCACCGCATCCCGCAGGTGGATCCCGAACTGGGC
AGTCTGCTGAGACGCCCTGTCGTCTTCCTGCTCTCCGGACTCTATGCCTC
ATCGGATGTGTGGCTGCTGAACGGGCGGGAGGACTCCTTAGCCTACCTCC
TTTGGCGAGCAGGATACGATGTGTGGCTGGGAAACAACAGAGGCAACATC
TACTGCCGGAAGAACATGTGGCGGAACACCACAGAACGGGAGTTCTGGGA
CTTCAGCTGGCACGAGATGGGCGTCTACGATTTGCCAGCCCAGGTGGATT
ACGTGCTCCGGACAACCGGACAGAAGGCTATGCACTTTGTGGGGATCTCG
CAGGGCGGCACCGTCTTCCTGGTCCTCAATTCGATGATGCCACAGTATAA
TGCCGTTTTCAAGAGCGCCACCCTGCTGGCCCCGGTGGCCTATGTGAGCA
ATACAAAGAGTGGGCTGGCCAAGGTCATTGGTCCAGTGCTTGGCACACGG
AACTATGTCTCTAAGATGCTTGAGGGCGTCGAGATGTTCTCCACGAACAA
GTTCTTCAAGAAGTTCCTATCGATGACGTGTCTGGAGAACGAAAAGCCAC
TGGTCTGCATCAGTCGCCTGTGGCCAGCCGTTGGCTATGACACCCGATTC
CTTTACAAGACGTTATTGCCCGACCTGATGGCCAACTTTCCCGGCGGGCG
GATCGGTGAAGCAGCTGATGCACTACTTCCAGGGCTATGTGTCCACAGAT
TCCGGCAGTATGACTACGGTCCCGGGCGGACCAGGCTGCACTATTCAGCA
CTGAGCCACGGAGTACGCGCCTGGAACGTGTCCACGCCAGTTACGTCTTT
CTTCTCGAAACGACTACATTGGTCGCCGGCGGAATTGGCATTGATCACCG
UFO11994.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:47:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6753-RB | 1774 | CG6753-RB | 378..1452 | 84..1149 | 4905 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:47:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12640517..12641283 | 1121..360 | 3315 | 97.3 | Minus |
| 3R | 32079331 | 3R | 12641538..12641711 | 362..189 | 870 | 100 | Minus |
| 3R | 32079331 | 3R | 12641998..12642105 | 191..84 | 540 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 17:47:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2852..2912 | 431..492 | 127 | 69.4 | Plus |
UFO11994.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:34:37 Download gff for
UFO11994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6753-RB | 463..1537 | 77..1143 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:31:41 Download gff for
UFO11994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6753-RB | 372..1446 | 77..1143 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:39:34 Download gff for
UFO11994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6753-RB | 372..1446 | 77..1143 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:39:34 Download gff for
UFO11994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12640491..12641283 | 360..1143 | 97 | <- | Minus |
| 3R | 12641541..12641710 | 190..359 | 100 | <- | Minus |
| 3R | 12642000..12642108 | 77..189 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:31:41 Download gff for
UFO11994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8466213..8467005 | 360..1143 | 97 | <- | Minus |
| arm_3R | 8467263..8467432 | 190..359 | 100 | <- | Minus |
| arm_3R | 8467722..8467830 | 77..189 | 96 | | Minus |
