UFO11995.5prime Sequence
1144 bp (1054 high quality bases) assembled on 2012-06-29
> UFO11995.5prime
TGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCG
TATAGCATACATTATACGAAGTTATCAGTCGACATGTCGCACGGTGGAGC
CGGTGGCGGTCTGGGAGCTCAAACTGTTGGAGCCGGCCAACTTGGAGGCG
GTGCAGCGGCAGCTGGCGGTGGAGAATACCGCGAACTCCACTGGACGGTC
TCAAGCGTAATGGACTCGTCTCGGGTCTCTACCTGCCTCATATCGATGCT
GCTGATAGTCTACGGCAGCTTTCGCTCCTTAAACATCGAGCAGGAGGCCC
GCGAGCGGGAGCAGAAGAAGCGAAATGAATCGATGACCAATCTTCTTACC
GGCGAGCCCGTCGAGAAGGAACCAACGGATAAATTCGCCACTCTGGACAC
GATGCATGCCCTCTGTTTGCCCCTCGGAGCTTCCATCTCACTGCTCATCA
TGTTCTTCTTCTTCGACTCGATGCAGCTGCTCTTCGCCGTCTGCACAGCG
ATTATAGCCACCGTGGCGCTGGCCTTTCTGCTGCTGCCCATGTGCCAGTA
CATCATCAGGCCATGCACAGATGGAAAGCGATTCTCCTTCGGATTCTGCG
GTCGCTTCACAGCCGCGGAGCTCTTCAGCTTTACGCTTTCGGTATCGATT
GTGTGCATATGGGTGCTCACTGGCCACTGGCTGCTAATGGATGCAATGGG
CATGGGCCTGTGTGTGGCATTCATAGCGTTTGTGCGTCTGCCCAGCTTGA
AGGTGTCCACGCTGCTGTTGACCGGCCTGCTCATCTACGACGTCTTCTGG
GTATTCCTCTCCTCGTACATCTTCAGCACCAACGTGATGGTCAAGGTGGC
GACGCGACCCGCCGATAATCCCGTGGGCATCGTGGCCAGAAAGTTGCATC
TGGGTGGCATTGTGCGGGACACACCAAAGCTGAATCTGCCCGGAAAGCTT
GTTTTTCCCAGCCTGCACATACCGGTCACTTCTCTATGCTGGGCCTGGGT
GATGTGGTGATGCCCGGGCCTGTGCTGTGCTTCGTCTTGCGGTATGATGC
GTACAAGAGGCGCCAGCCGTTCACAAGGATCCCACATGTCACCACCCAGA
GGAGTGGCTTCAGGTTGACTACTCATGTGTATTGGTTATTCTTG
UFO11995.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:50:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SppL-RF | 2561 | CG17370-RF | 602..1642 | 83..1119 | 4925 | 98.7 | Plus |
| SppL-RC | 2164 | CG17370-RC | 205..1245 | 83..1119 | 4925 | 98.7 | Plus |
| SppL-RB | 2101 | CG17370-RB | 649..1689 | 83..1119 | 4925 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:50:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25886565..25886980 | 693..1105 | 1720 | 95.9 | Plus |
| 3R | 32079331 | 3R | 25885537..25885829 | 83..375 | 1465 | 100 | Plus |
| 3R | 32079331 | 3R | 25886307..25886498 | 502..693 | 960 | 100 | Plus |
| 3R | 32079331 | 3R | 25885895..25886020 | 376..501 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:50:53 has no hits.
UFO11995.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:20 Download gff for
UFO11995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17370-RC | 197..1248 | 77..1123 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:56 Download gff for
UFO11995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SppL-RA | 442..1493 | 77..1123 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:26 Download gff for
UFO11995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SppL-RB | 643..1694 | 77..1123 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:26 Download gff for
UFO11995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25885537..25885829 | 83..375 | 100 | -> | Plus |
| 3R | 25885895..25886020 | 376..501 | 100 | -> | Plus |
| 3R | 25886307..25886498 | 502..693 | 100 | -> | Plus |
| 3R | 25886566..25887000 | 694..1123 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:56 Download gff for
UFO11995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21711259..21711551 | 83..375 | 100 | -> | Plus |
| arm_3R | 21711617..21711742 | 376..501 | 100 | -> | Plus |
| arm_3R | 21712029..21712220 | 502..693 | 100 | -> | Plus |
| arm_3R | 21712288..21712722 | 694..1123 | 96 | | Plus |
