UFO11996.5prime Sequence
1177 bp (1047 high quality bases) assembled on 2012-06-29
> UFO11996.5prime
AACTCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAA
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCATTGTCG
AAGAAACTAAGCAGCAAAATCTATCGGAGCAGCAGACAAAAAAAAATGTT
AACGTTTTGGGAAAAGACATCAAAAAAATCAGCAGATATACCAAACCAAA
TCAGCGGAGCACTTGCATCAAGTAACTTAGCTATCTGCGCCTGTCTAATA
GTAATCTTCATTGCATCTGTAACCACGGCCAAAACACCGGATCAGGAAGC
TATCCATCACAAAAATGACGAATTTCCGGAAGAGGAAAGCGACATGGTGA
TGGAGCCAAATGATTTTTCGCCAATCACTGTACTAAAGTCACATGAACAA
CACTTTCATATGCCGCCCACAACGCATCTTCAGCCACAAGTTCAAGCTAG
AATTCATCCTAGAGTTCAACCCAGAAAATTTCAATCCGCACTCCAACAAA
ATGCTGAGGAGCCATTCCGGCCCATTGCTAATCCAAATACGAAGATTGTT
GGCGATTCTCATACGCAGGCTGCCCAAAATTTCTACCCACCTTTCTACCA
TGAGGCTCCTCCACTGGGCCATTCCAGACCTTACTTTGGTCACGGCCCGC
CTGTATCGGAAACAACTCCTTTATCCTTACCCCTTCCGCTCTTGACAACT
CAACAGCAACAGCCAGCAACTCAGCAGCGGACTTTCGATGCCAGTATACT
TGGAAGTGGGGATTTTGGTGTCCTTAGAGGTGGAACCTTCTATCCGGAGG
AGGAAATGCCCTATCACCCCGAAGATAACAGTGATTACATCTATGGAGAT
GCTAACAATGGACACGGTCGACCATCTGAGGGTTTTGTTCAAAAGTACAC
GTATCCAGAGGAGCAGTTCGCTAATTTCGCGATTTTGCCGATATCAACAC
GCCCGCCGATACGGCGTTTTCGCAATTTGTGGTGTGTATGCGGCAAAATG
CTCTGTACACACTCTCATCCGCATCTAAAAAACAAAATTTGAACAGTTAG
AGGCAGCTGACAGGAAATGAAGCTGAAAAATACCGAATTTGAGAACAAAC
TTCTTCGAAAATAAAGTCGAAATTGTTCTTAATACAAAGTTGCAAAAAAA
ATTACCGGAAAAAAAAACGGGCCCCCA
UFO11996.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:50:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32816-RF | 1834 | CG32816-RF | 253..1341 | 89..1175 | 4995 | 97.9 | Plus |
| CG32816-RE | 1730 | CG32816-RE | 149..1237 | 89..1175 | 4995 | 97.9 | Plus |
| CG32816-RA | 1821 | CG32816-RA | 240..1328 | 89..1175 | 4995 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:50:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 317089..317929 | 1152..317 | 3545 | 97.2 | Minus |
| X | 23542271 | X | 333565..333793 | 317..89 | 1145 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 17:50:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 6873..6958 | 1082..1168 | 135 | 64.8 | Plus |
UFO11996.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:21 Download gff for
UFO11996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32816-RA | 238..1326 | 89..1176 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:58 Download gff for
UFO11996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32816-RB | 224..1312 | 89..1176 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:28 Download gff for
UFO11996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32816-RA | 240..1328 | 89..1176 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:28 Download gff for
UFO11996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 317069..317928 | 318..1176 | 97 | <- | Minus |
| X | 333565..333793 | 89..317 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:58 Download gff for
UFO11996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 211102..211961 | 318..1176 | 97 | <- | Minus |
| arm_X | 227598..227826 | 89..317 | 100 | | Minus |
