UFO12001.5prime Sequence
1171 bp (1046 high quality bases) assembled on 2012-06-29
> UFO12001.5prime
CTCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACT
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTTCATCAAGTT
GCTTCTAATTAGCCAGCTGCTGGCGCTGAGTTACGCTCAGTTGTCGCTCG
ACGAGGCTAAAAAGCAAATCGATGCCTCGCTTTACAGCGAAGAGGAGACT
ACCGATGATACGCATCTGCCGGAGCCCCACCTGCCCCCCCAATATCAGCC
TCATCATCCCCACAAGAAGGTGACCACCACCACTCCCGAGCCGGAAACCA
CAACTCCAAAGCCAGAAACCACCACGAAGCCCGCAATAGAGCAGGAGGGT
GAGGCCACCGCTGCTCCCGATGACGGACTGGGTCAACTGGATGATGGCTT
GCAACAAAACAATGATGGATCTGCGCTTCCAGAGTCCACCACTCCGGAAC
CGGAAACCACGACCCCTACGACGACCACCACCACAACGCCAAAGCCCCAT
AAGCATGAGCCCCACTTTCATCCCCATTCTTATCCGCATCCTCACCCCTA
TCCCTACCCCATTCAGTATCCCTACCCCCATCCAGGAGTGATATTCTCTG
CCGCGGGACCTAAGCTTACTCCTCCATCGACCACACCGCCCACTGCCAAA
GATGCGGACAAGGAATCGCCGGAGCTGTCTGGATATCCCTCCTATCCGAC
CTTCAGATCACCGTACTCGCCCTACCAACCCCAGGTGTTCCCTCAGCCTC
GTAACTGGCCCAGCTTCCCAGGATACGGACCTCCCAGTCCCGGTTTCGGA
TACCCCCACAACCACAATCACGATCACGAAGAAGACTCCGGCGAAGATAA
GCCCAAAGGACAAGTCTGGTGAAAAGGATATGACGAGGATGTGGCTCTGA
AGCCACCAGGATTTAGCTACCCGCAGTCTATTTGATTCCCCGAAGACCAG
TGATCTCTGTGCCCAGCTTTCCGCGTCCAGGAGCGATATGGTTCGCCCTA
CGCTACGGACTCTACGCAGCTTTCTAGACATTCGTTTGGCGCGCGGGCCC
AGTAGTGTCATATCATATCATAATCATATCATATCCAACTAGCTAGAGAT
TCCTGGTCATGACTAGTGCTGATTCTCACCAATAGAGCCTGGCGCACCTG
TAACGTTCTGAACAATCCGAA
UFO12001.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:51:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16772-RB | 1030 | CG16772-RB | 47..979 | 87..1015 | 4505 | 99.3 | Plus |
| CG16772-RA | 1095 | CG16772-RA | 47..979 | 87..1015 | 4505 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:51:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19962824..19963728 | 115..1015 | 4235 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:51:30 has no hits.
UFO12001.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:28 Download gff for
UFO12001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16772-RA | 39..980 | 78..1015 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:19 Download gff for
UFO12001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16772-RA | 38..979 | 78..1015 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:46 Download gff for
UFO12001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16772-RA | 38..979 | 78..1015 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:46 Download gff for
UFO12001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19962826..19963728 | 117..1015 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:19 Download gff for
UFO12001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19962826..19963728 | 117..1015 | 99 | | Plus |
