UFO12002.5prime Sequence
1142 bp (986 high quality bases) assembled on 2012-06-29
> UFO12002.5prime
TGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCG
TATAGCATACATTATACGAAGTTATCAGTCGACATGAACTACAATCCAAA
TCCGGGTATGCGGAACCCCTCAGCTGCCGGTCGCCCAAGGCCGCCGAAGC
GTGTGAGTGATGTTAACGCCATGGGACCCTCGGCTCCGATGATGGGCGGT
GGCGCCACCTTCATGGCCCCGCCCACCGGCCCCGGAATACTAGATCCCAA
TATGTACGGAGCACCTGCTCCGGCCCCGGTCAACAGCTATGGCTTCGACC
CCAATCTCGGCCAGCCCTCGCAGCACATTCAGCAGCCACCACAACAGCAG
CCCGGATACGGATATGGAGCACCACCTCCCCAACAGGCGGCTGGGCCACC
CACCTACGGAATAGGAGCACCTCAGCCTGTAGCTCCACCCACTGGACAGT
ACCCACAGTTCGCCATGTTCCAGCAGCCCATCGTGCAAGACATGGCTATG
CAGTACGGTCAGAAACTAGCGGATCAGGGCAAGCAGATCATGGAGAATCA
GTTCGAGAAGTGGGTGCCCGTAGCCAAGCTCAAGTACTACTTCGCAGTGG
ACAACGCCTACGTGGGCAGGAAGTTGCGCCTTCTGTTTTTCCCCTATATG
CATAAGGATTGGTCCCTGCGCTACGACCAAGAGCACCCAGTGCAACCACG
ATATGATGTTAATGCGCCAGATCTCTATCTGCCCACCATGGGCTACATCA
CATACGTGATCGTAGCGGGTTTGCTTCTGGGCATGCAGAAGCGATTTTCG
CCGGAGCAGCTCGGCATTCAGCCTCCAGCGCCATGGCATATAGCATTTTC
GATTGGTCATTTACTCCCTAGCCCTGTACGTAATGATGTGAGACGAGCTG
AAACGCTTGTCTGCTGCATCACTGTATAGTACGTATAAGTGTCTGCTGAT
GTAGCACGCTGTCTTAGTCTGATATTATATAGCACTGCTATACAGTTCTC
TCGTTCTCATGCTCGCACGTGGACGACTGCTGCAGACACTCCCGCTGCCC
ATGGAGCATCACTACGATCGATGCATCAGCATGATACGCGAAAGCATCAT
CGTCGACTCGGAGCTTCCTCGTCAACTGTGCAGGAGTCAGGC
UFO12002.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:51:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5484-RA | 1507 | CG5484-RA | 108..1034 | 84..987 | 4100 | 97.5 | Plus |
| CG5484-RC | 1522 | CG5484-RC | 152..1049 | 113..987 | 3940 | 97.3 | Plus |
| CG5484-RB | 1495 | CG5484-RB | 130..1022 | 118..987 | 3930 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:51:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26718328..26718867 | 118..657 | 2700 | 100 | Plus |
| 3R | 32079331 | 3R | 26718920..26719153 | 655..886 | 1070 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:51:33 has no hits.
UFO12002.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:29 Download gff for
UFO12002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5484-RA | 124..980 | 76..924 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:22 Download gff for
UFO12002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5484-RA | 101..957 | 76..924 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:47 Download gff for
UFO12002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5484-RA | 101..957 | 76..924 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:47 Download gff for
UFO12002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26718328..26718866 | 118..656 | 100 | -> | Plus |
| 3R | 26718922..26719198 | 657..924 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:22 Download gff for
UFO12002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22544050..22544588 | 118..656 | 100 | -> | Plus |
| arm_3R | 22544644..22544920 | 657..924 | 96 | == | Plus |
