UFO12003.5prime Sequence
1171 bp (1058 high quality bases) assembled on 2012-06-29
> UFO12003.5prime
AATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTA
TAGCATACATTATACGAAGTTATCAGTCGACATGGGCGACATCGAAGTAA
AGAAGGAGGAACAACCGACGACGCCCTCCAATTCCTCGTCCAGTGACGAC
GACGAGGAGGCCCCAGACGACACAATGGATAAGGTTCGACGCTTCTTTGC
AAACACTCTACATCTCGGCGGCTCCTCGGACGCAAAGGAGGAAGTTAAAG
TAGAGAAGGTTATTCCAGATTTGAGTTTTGACGGCTTTGCCGAACATTGG
CGTGTGCATGGTTTCCGCAAGATTGTGACCATGGTGGGAGCCGGCATATC
TACATCTGCTGGCATTCCGGATTTCAGATCCCCAGGTTCCGGGTTATACA
GCAATCTGAAGAAGTACGAGCTGCCACATCCTACGGCCATATTCGATCTG
GACTACTTCGAAAAGAATCCAGCGCCGTTTTTTGCACTGGCCAAGGAACT
TTACCCTGGATCCTTCATTCCCACGCCGGCCCACTACTTTATCCGTTTGC
TTAACGACAAGGGACTACTGCAGCGCCACTACACCCAGAACATAGACACG
CTAGACCGGCTTACTGGCCTGCCCGAGGACAAGATCATTGAGGCCCATGG
CAGCTTCCACACCAACCACTGCATTAAGTGCCGCAAGGAGTACGACATGG
ACTGGATGAAGGCGGAGATCTTCGCCGATCGTCTGCCCAAATGCCAAAAG
TGCCAAGGCGTTGTTAAACCAGACATTGTTTTCTTTGGCGAAAACTTGCC
AAAGAGATTTTACTCCAGTCCTGAAGAGGATTTCCAGGATTGCGATCTGC
TGATCATCATGGGCACATCGTTGGAAGTGCAACCGTTTGCTTCACTGGTG
TGGAGACCAGGACCACGTTGCATTCGCCTCTTGATCAATCGCGATGCAGT
GGTCAGCCAGCTGTGTGCTCTTTATGGATCCCAACACGCGATCGCTACTC
TTCGATAAGCCCAATAACACTAGGGATGTGCTTTCTGGGCGACTGTGATG
CTGCGTAATGACTCTGCAAGCTGGCTGGTACAGAGCTGCACAGCTATACA
GTGAGAAGAACTGACGCAGCAAATAGTGAGACCTGCACCAGCAAGAAACG
CATCGACGGAAAATGAACTCG
UFO12003.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:51:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sirt2-RB | 2285 | CG5085-RB | 124..1114 | 81..1066 | 4825 | 99.4 | Plus |
| Sirt2-RA | 1399 | CG5085-RA | 124..1114 | 81..1066 | 4825 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:51:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20329029..20329744 | 356..1066 | 3350 | 99.2 | Plus |
| 3R | 32079331 | 3R | 20328875..20328973 | 257..355 | 495 | 100 | Plus |
| 3R | 32079331 | 3R | 20328727..20328822 | 165..260 | 480 | 100 | Plus |
| 3R | 32079331 | 3R | 20328588..20328673 | 81..166 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:51:36 has no hits.
UFO12003.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:30 Download gff for
UFO12003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sirt2-RA | 109..1109 | 72..1066 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:25 Download gff for
UFO12003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sirt2-RA | 109..1109 | 72..1066 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:49 Download gff for
UFO12003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sirt2-RA | 114..1114 | 72..1066 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:49 Download gff for
UFO12003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20328588..20328673 | 81..166 | 100 | -> | Plus |
| 3R | 20328729..20328820 | 167..258 | 100 | -> | Plus |
| 3R | 20328877..20328973 | 259..355 | 100 | -> | Plus |
| 3R | 20329029..20329738 | 356..1060 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:25 Download gff for
UFO12003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16154310..16154395 | 81..166 | 100 | -> | Plus |
| arm_3R | 16154451..16154542 | 167..258 | 100 | -> | Plus |
| arm_3R | 16154599..16154695 | 259..355 | 100 | -> | Plus |
| arm_3R | 16154751..16155460 | 356..1060 | 99 | -> | Plus |
