UFO12005.5prime Sequence
1102 bp (1042 high quality bases) assembled on 2012-06-29
> UFO12005.5prime
CTCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACT
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCCGGTCTGGT
TAAGAGCGATACGGAGGACTTTATCGACTGGTGGCCGCACACGGTGTTCT
ATCAGATCTACCCGAGGTCATTCAAGGACAGCAATGGCGATGGTATCGGC
GATTTGAAAGGAATCACCTCCAAGCTGCGCTATCTGGCGGACACTGGCAT
CACGGCCACCTGGTTGAGTCCCATTTTTCAGTCGCCCATGATTGACTTTG
GCTATGATATATCGGATTACAAGGCAATCCAGCCGGAGTATGGCACCATG
CAGGATTTCGAGGAGCTGATCGACACGGCTTTCGAGCTGGGCATCAAGGT
TGTTCTGGACTTTGTGCCGAATCACAGCTCGGATCAGCATGAGTGGTTCA
AGAAGTCTGCGGCAAGGGAGCCGGGTTACGAGGATTTCTATGTGTGGCAC
GATGGCATCGTCCAGGAGAATGGCACTCGGGTGCCACCCAACAACTGGCC
ATCGGTGTTCTACGGATCCGCTTGGGAGTGGCACGAAGGTCGTGAGCAGT
ATTACCTGCACCAGTTCACCAAGGAGCAGCCGGACTTGAACTATCGCAAT
CCCAAAGTGGTTCAGGCCATGGATGATGTGTTGCTTTTCTGGCTCAACAA
GGGCGTAGCTGGTTTCCGCATCGATGCAGTGAATCATTTGTTTGAGGACG
AATCTCTTAAAGATGAGCCATTGAGTGGCAAAACAACGGATTCACTTTCC
TATGACTACACTAAGCACATCTACTCGAGAGATCTGCCAGAAGTCTTGGA
AATGATTCATCACTGGAGGCAACTGCTGGATGACTTTAGTGCCAAGCACC
CCGAAAGACCAACACGCATCATGATGACGGAGCGTACGCAGGACTAACCC
AGCTGGCGGACTACTACGAGGATTCCACGGGGTTCGGGGCTCCCATCTGC
CCTTCAACTTTCCACTTTATCACGATGTCAAAGCGACTCGATGCCGTGAC
TATGTTCTACAACGTGAGAAGTTGCTGATCTAATGCCACAGCGGGCACTC
CG
UFO12005.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:51:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mal-B2-RD | 1927 | CG14935-RD | 106..1122 | 87..1098 | 4810 | 98.8 | Plus |
| Mal-B2-RC | 2237 | CG14935-RC | 106..1122 | 87..1098 | 4810 | 98.8 | Plus |
| Mal-B2-RA | 1935 | CG14935-RA | 114..1130 | 87..1098 | 4810 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:51:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11850412..11851350 | 87..1024 | 4550 | 99.7 | Plus |
| 2L | 23513712 | 2L | 11847327..11847925 | 129..727 | 820 | 75.8 | Plus |
| 2R | 25286936 | 2R | 8453751..8453888 | 153..290 | 195 | 76.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:51:39 has no hits.
UFO12005.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:31 Download gff for
UFO12005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14935-RD | 100..1125 | 82..1102 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:27 Download gff for
UFO12005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mal-B2-RA | 108..1133 | 82..1102 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:50 Download gff for
UFO12005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mal-B2-RA | 108..1133 | 82..1102 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:50 Download gff for
UFO12005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11850406..11851431 | 82..1102 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:27 Download gff for
UFO12005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11850406..11851431 | 82..1102 | 98 | | Plus |
