UFO12006.5prime Sequence
1146 bp (1058 high quality bases) assembled on 2012-06-29
> UFO12006.5prime
ACTCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAAC
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAGAAGAATTG
GTCTTTTAAATAGTTTAATGCGCCAGAAAACGACTGCCAGAAACTTGTTT
CAGTTCGGCAAAGTTAAGGGAGATACTGGCAAATATGAACAGATCGTGTC
CACCGGCCAAGTTTCCCCGGAACGTTTTGTGCCCGAGGAGATCAAGAAAC
CGGCGTACTACTTCAAGAATATGCCACCGGGTAACACGCTGGGATCGCCC
GAAATCAAAAGCCAGGTTCAGATTGATGCCATGCGTCTAAGCGGCAGACT
GGCGGCCAGGATACTGCGCGAATGCGGTAAACTAGCAACAGTTGGCACAA
CCACCGATCAGATTGATGCCTTTGCGCATGAAAGAATTCTCGAGTCCAAA
GCGTATCCGTCGCCGCTGAGATACGCCGGCTTCCCAAAGTCCATTTGCAC
GTCGATCAACAATATCGCCTGTCACGGAATTCCGGATGACCGGCAGTTGG
CCGATGGGGATATTATAAATATTGATGTCACAGTCTTTTTGAACGGCTAC
CATGGCGACTGTTCGGAAACATTTCGGGTGGGCAACGTGGACGAACGGGG
TGGCTTTCTCGTGGAGGCCACTAAATCCTGTTTGGATCAGTGCATTTCGC
TGTGCGGCCCCGGTGTGGAATTCAATGAGATTGGAAAGTTCATAGACAGA
TATTGCGACGAACATGATCTGGCATCGATAGCTGCTTTCATTGGACATGG
AATCGGTAGCTATTTCCACGGCCCCCCGGAGATACTACACTATTATAATG
AGATTCCTGGAAAGATGCAGCCCGGCATGACCTTCACCATTGAACCCATT
CTGTCCCTGGGCGGAGCAGAATAGCAGTGCTGCAGATGGCTGGACGGCCA
TTAGTTTGGATGCGCACGTAGCGCCCAGTTCGAGCACACCATTCTGATAC
GAGACGGAACGAGATACTTACAAGAGATCAGCAGCTTTCTAGACATCGTT
TGGCCGCGCGTTCAGTAGTGTCATAATTCATATCATATCTATCATAATCC
ACTAGCTAGGAAATCTGGTCTGACTATGGCTTGAATCTCCACAATA
UFO12006.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:51:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5188-RA | 1050 | CG5188-RA | 20..969 | 88..1030 | 4585 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:51:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10428985..10429663 | 170..848 | 3380 | 99.9 | Plus |
| 2L | 23513712 | 2L | 10429715..10429907 | 845..1030 | 655 | 95.3 | Plus |
| 2L | 23513712 | 2L | 10428848..10428930 | 88..170 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:51:41 has no hits.
UFO12006.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:31 Download gff for
UFO12006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5188-RA | 16..973 | 88..1038 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:28 Download gff for
UFO12006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5188-RA | 20..977 | 88..1038 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:51 Download gff for
UFO12006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5188-RA | 20..977 | 88..1038 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:51 Download gff for
UFO12006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10428848..10428930 | 88..170 | 100 | -> | Plus |
| 2L | 10428986..10429659 | 171..844 | 100 | -> | Plus |
| 2L | 10429715..10429907 | 845..1030 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:28 Download gff for
UFO12006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10428848..10428930 | 88..170 | 100 | -> | Plus |
| arm_2L | 10428986..10429659 | 171..844 | 100 | -> | Plus |
| arm_2L | 10429715..10429907 | 845..1030 | 96 | == | Plus |
