UFO12009.5prime Sequence
1136 bp (1062 high quality bases) assembled on 2012-06-29
> UFO12009.5prime
ACTCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAAC
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAACTCCACCA
CAAAGCATCTGCTGCACTGCACACTGCTCATCACTGTGATAGTTACCTTC
GAAGTATTCTCCGGCGGTATTAAGATTGACGAGAACTCGTTCACGCTCGT
GGATCCTTGGACTGAATACGGCCAATTGGCCACGGTTCTGCTGTACTTAT
TGCGCTTTCTCACGCTGCTCACGCTGCCCCAGGTGCTGTTCAATTTCTGC
GGCCTGGTATTCTACAATGCCTTCCCCGAGAAGGTCGTCCTCAAGGGCAG
CCCCCTGCTGGCGCCCTTCATCTGCATCCGTGTGGTCACGCGCGGCGACT
TCCCGGATTTGGTTAAGACGAATGTGCTGCGCAACATGAACACCTGCCTA
GACACGGGACTGGAGAACTTTCTCATCGAAGTGGTCACGGACAAGGCGGT
GAATCTGTCACAGCATCGACGCATCCGAGAGATCGTTGTGCCCAAGGAGT
ACAAGACGAGAACCGGGGCGTTGTTCAAGTCGCGTGCCCTGCAGTATTGC
CTGGAGGATAATGTGAACGTGCTGAACGACAGCGACTGGATCGTCCATCT
GGATGAGGAGACGCTGCTCACGGAGAATTCGGTGCGTGGTATCATTAACT
TTGTGCTGGATGGCAAGCACCCGTTCGGCCAGGGCCTGATCACCTATGCC
AACGAGAACGTGGTCAATTGGCTGACCACATTGGCGGACAGCTTTCGGGT
CTCCGATGATATGGGCAAGCTGCGTCTGCAGTTCAAGCTCTTTCACAAGC
CGCTCTTCAGCTGGAAGGCAGTTATGTGGTCACCCCAGGTGAGTGCTGAG
CGTTCAGTGTCCTTTGACAACGGAATCGACGGTTCGGTGCCCGAGGATTG
CTTCTCGCGATGCGGGCCTTTAGCCAGGGCTACCACGTTCAACTTCATCG
AGGCGAAATGTACGAGTAGTCGCCGTTCACGCTGCTGGACTTCCTGCAGC
AAAGAAACGATGGCTCAGGCATTCTGCTGTGTCCACTCAGATGATCCGAA
GCCAAGCTCCTGCTGGCATCAGTCCTATCTGTCACT
UFO12009.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:51:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| egh-RD | 2946 | CG9659-RD | 845..1894 | 88..1123 | 4795 | 98 | Plus |
| egh-RB | 3303 | CG9659-RB | 718..1767 | 88..1123 | 4795 | 98 | Plus |
| egh-RC | 3595 | CG9659-RC | 1494..2543 | 88..1123 | 4795 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:51:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2596215..2597013 | 88..885 | 3945 | 99.9 | Plus |
| X | 23542271 | X | 2597325..2597506 | 887..1066 | 670 | 96.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:51:44 has no hits.
UFO12009.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:32 Download gff for
UFO12009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| egh-RB | 716..1771 | 88..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:30 Download gff for
UFO12009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| egh-RC | 1494..2549 | 88..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:52 Download gff for
UFO12009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| egh-RC | 1494..2549 | 88..1128 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:52 Download gff for
UFO12009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2596215..2597015 | 88..888 | 99 | -> | Plus |
| X | 2597327..2597581 | 889..1128 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:30 Download gff for
UFO12009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2490248..2491048 | 88..888 | 99 | -> | Plus |
| arm_X | 2491360..2491614 | 889..1128 | 91 | | Plus |
