UFO12010.5prime Sequence
823 bp (823 high quality bases) assembled on 2012-06-29
> UFO12010.5prime
CAGTCGACATGCCTAAGGAACAAGTCAAACTGGATGCCAGTAGACAGGTA
ATCAGCCCCGACGACTGCGAAGATCTCAGCCCGATGCCACAAACAGCTGC
TCCACCGGTTCGCAGGCGAGGCGGAATCTCCGCCGAACCCGTAACCGAAG
AGGATGCCACCAACTATGTTAAGAAGGTGGTGCCCAAGGACTACAAGACG
ATGAATGCCCTGTCCAAGGCGATTGCCAAGAACGTCCTGTTCGCTCACTT
GGACGAGAGCGAGAGATCCGACATATTTGATGCCATGTTCCCTGTGAATC
ACATCGCCGGCGAGAATATCATCCAGCAGGGCGATGAAGGCGACAACTTC
TACGTGATTGATGTGGGAGAGGTCGATGTTTTCGTCAACTCCGAACTAGT
GACCACCATCAGCGAGGGCGGCAGCTTTGGTGAACTGGCCCTCATCTATG
GCACTCCTCGCGCCGCCACCGTGCGCGCCAAAACCGATGTGAAGCTGTGG
GGAATCGACCGCGACTCCTACCGCCGCATTCTGATGGGCTCGACCATCCG
CAAGCGCAAGATGTACGAGGAGTTCTTATCGCGCGTGTCCATTCTGGAGA
GCTTGGACAAATGGGAGCGCCTCACAGTGGCCGATTCCCTGGAGACGTGC
TCCTTCGATGACGGTGAGACGATTGTCAAGCAGGGAGCAGCTGGCGATGA
CTTCTACATCATCCTCGAGGGCTGTGCGGTGTGCTGCAGCAGCGTTCTGA
GCAGGCGAGGATCCCGCCGAGGTGGGCCGTCTGGTAGCACGATTACTTTG
GCGAGATTGCTCTGCTTTTGGAA
UFO12010.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:51:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pka-R1-RW | 2426 | CG42341-RW | 264..1081 | 9..822 | 3990 | 99.5 | Plus |
| Pka-R1-RQ | 2423 | CG42341-RQ | 264..1078 | 9..822 | 3970 | 99.4 | Plus |
| Pka-R1-RAC | 3243 | CG42341-RC | 321..1130 | 17..822 | 3950 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:51:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20833283..20833657 | 378..751 | 1825 | 99.7 | Plus |
| 3L | 28110227 | 3L | 20832844..20833207 | 16..379 | 1820 | 100 | Plus |
| 3L | 28110227 | 3L | 20833733..20833803 | 754..822 | 255 | 97.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:51:22 has no hits.
UFO12010.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:26 Download gff for
UFO12010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-R1-RW | 257..1081 | 1..823 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:13 Download gff for
UFO12010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-R1-RW | 257..1081 | 1..823 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:40 Download gff for
UFO12010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-R1-RW | 257..1081 | 1..823 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:40 Download gff for
UFO12010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20832840..20833205 | 10..377 | 99 | -> | Plus |
| 3L | 20833283..20833657 | 378..751 | 99 | -> | Plus |
| 3L | 20833730..20833803 | 752..823 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:13 Download gff for
UFO12010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20825940..20826305 | 10..377 | 99 | -> | Plus |
| arm_3L | 20826383..20826757 | 378..751 | 99 | -> | Plus |
| arm_3L | 20826830..20826903 | 752..823 | 94 | | Plus |
