UFO12011.5prime Sequence
1146 bp (1024 high quality bases) assembled on 2012-06-29
> UFO12011.5prime
CTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTC
GTATAGCATACATTATACGAAGTTATCAGTCGACATGGCACCAATGCCCC
GAATTCAGTTACCCAATGGAAATTCTTCCATAAAGGCTAGCACAAATGAT
TTTCTCTTTGCGGAAACAATGTCCGGCGACAGTAGTCCCACCCCCAGCAG
TCCGCCATCCAGTACAGCAGGCGTTGCCAAATCTCAGTGTTCTTCCCTTT
CGGATGGCGAATCCTTTGAGGGATATGGCGAAAATGAGTATCCCACCCAA
CTTCGCGAAGCCCGCAGCTCCAATTCCAATGGGAGCCATAATATGAGCAA
TCATATTAACAATAATTCTAATATCAGCGTGGGCAACAACAGTGGACACA
ACCACAGTGGACACTCGAACGATGGAAATAACAACCTAAATGGCAGCACT
GGCGTCGAACTCGATTTGGCTCCACACGTCGGCTCATCAACACCTCAAGA
TGATGACGAACTAAACATAATGCCCCGGGATAATTGGGCCAGGCGCAGTC
TGCGACGAACTCCCACCAGTTCCGGCCGCAGGCAAATTAGTTCAAATGCC
TTAGCCAGCCAACTCTATAGATCATCGAGCTTTAACTCATCGGGCCGTAG
CTCCAACTGTGATACAACAGAAGACATGTACAGCGACATAAGCTTGGAGA
ATCGTCATGACTACGATTATAGGCTGGAACTGCTGCAGCGCAAGGTGGAC
GATCTGTCAGATACACAGAATATAGCTGAGGATCGGACAACCCGCACCAA
GACCGAATATGCAGTCCTTCACGCGCGTTATCACATGCTCGAAGAGCAGT
ACCGAGAGTCGGAACTGCGTGCCGAGGAGCGTTTGGCAGAGGAGCAGAAG
CGGCACCGCGAGATTTTGGCCCGCGTGAGCGTGAAGCCTCGCTGCAGAAC
GAGAACTGCCAGATGAGATCCGTGCCACCGAGATCGAGGCAACGGCACTG
CGGGAAGAGCCGCCCGACTGCGTGTCTTTTTGACAGCAGCCAATGAACTC
CATCGCACGAGAACAGTTGAGCTGGCGCGGCGACCAATCGCGTTCCTGCA
ACAGGAGCACCGAGGAACAGCACAGGTCACTGCCCGCCACGGACAG
UFO12011.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:51:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nuf-RL | 2735 | CG33991-RL | 741..1813 | 83..1146 | 4870 | 97.9 | Plus |
nuf-RA | 2696 | CG33991-RA | 741..1813 | 83..1146 | 4870 | 97.9 | Plus |
nuf-RC | 3446 | CG33991-RC | 741..1813 | 83..1146 | 4870 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:51:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14200162..14200447 | 215..500 | 1430 | 100 | Plus |
3L | 28110227 | 3L | 14230654..14230826 | 857..1026 | 715 | 98.3 | Plus |
3L | 28110227 | 3L | 14199966..14200100 | 83..217 | 675 | 100 | Plus |
3L | 28110227 | 3L | 14230175..14230310 | 723..858 | 665 | 99.3 | Plus |
3L | 28110227 | 3L | 14213087..14213203 | 607..723 | 585 | 100 | Plus |
3L | 28110227 | 3L | 14200739..14200807 | 501..569 | 345 | 100 | Plus |
3L | 28110227 | 3L | 14212191..14212232 | 567..608 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:51:25 has no hits.
UFO12011.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:27 Download gff for
UFO12011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nuf-RA | 731..1809 | 77..1146 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:15 Download gff for
UFO12011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nuf-RC | 735..1813 | 77..1146 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:42 Download gff for
UFO12011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nuf-RC | 735..1813 | 77..1146 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:42 Download gff for
UFO12011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14200165..14200447 | 218..500 | 100 | -> | Plus |
3L | 14200739..14200807 | 501..569 | 100 | -> | Plus |
3L | 14212194..14212232 | 570..608 | 100 | -> | Plus |
3L | 14213089..14213203 | 609..723 | 100 | -> | Plus |
3L | 14230176..14230310 | 724..858 | 99 | -> | Plus |
3L | 14230656..14230919 | 859..1114 | 93 | -> | Plus |
3L | 14199966..14200100 | 83..217 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:15 Download gff for
UFO12011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14193066..14193200 | 83..217 | 100 | -> | Plus |
arm_3L | 14193265..14193547 | 218..500 | 100 | -> | Plus |
arm_3L | 14193839..14193907 | 501..569 | 100 | -> | Plus |
arm_3L | 14205294..14205332 | 570..608 | 100 | -> | Plus |
arm_3L | 14206189..14206303 | 609..723 | 100 | -> | Plus |
arm_3L | 14223276..14223410 | 724..858 | 99 | -> | Plus |
arm_3L | 14223756..14224019 | 859..1114 | 93 | -> | Plus |