Clone UFO12011 Report

Search the DGRC for UFO12011

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:120
Well:11
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/Transcriptnuf-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO12011.5prime Sequence

1146 bp (1024 high quality bases) assembled on 2012-06-29

> UFO12011.5prime
CTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTC
GTATAGCATACATTATACGAAGTTATCAGTCGACATGGCACCAATGCCCC
GAATTCAGTTACCCAATGGAAATTCTTCCATAAAGGCTAGCACAAATGAT
TTTCTCTTTGCGGAAACAATGTCCGGCGACAGTAGTCCCACCCCCAGCAG
TCCGCCATCCAGTACAGCAGGCGTTGCCAAATCTCAGTGTTCTTCCCTTT
CGGATGGCGAATCCTTTGAGGGATATGGCGAAAATGAGTATCCCACCCAA
CTTCGCGAAGCCCGCAGCTCCAATTCCAATGGGAGCCATAATATGAGCAA
TCATATTAACAATAATTCTAATATCAGCGTGGGCAACAACAGTGGACACA
ACCACAGTGGACACTCGAACGATGGAAATAACAACCTAAATGGCAGCACT
GGCGTCGAACTCGATTTGGCTCCACACGTCGGCTCATCAACACCTCAAGA
TGATGACGAACTAAACATAATGCCCCGGGATAATTGGGCCAGGCGCAGTC
TGCGACGAACTCCCACCAGTTCCGGCCGCAGGCAAATTAGTTCAAATGCC
TTAGCCAGCCAACTCTATAGATCATCGAGCTTTAACTCATCGGGCCGTAG
CTCCAACTGTGATACAACAGAAGACATGTACAGCGACATAAGCTTGGAGA
ATCGTCATGACTACGATTATAGGCTGGAACTGCTGCAGCGCAAGGTGGAC
GATCTGTCAGATACACAGAATATAGCTGAGGATCGGACAACCCGCACCAA
GACCGAATATGCAGTCCTTCACGCGCGTTATCACATGCTCGAAGAGCAGT
ACCGAGAGTCGGAACTGCGTGCCGAGGAGCGTTTGGCAGAGGAGCAGAAG
CGGCACCGCGAGATTTTGGCCCGCGTGAGCGTGAAGCCTCGCTGCAGAAC
GAGAACTGCCAGATGAGATCCGTGCCACCGAGATCGAGGCAACGGCACTG
CGGGAAGAGCCGCCCGACTGCGTGTCTTTTTGACAGCAGCCAATGAACTC
CATCGCACGAGAACAGTTGAGCTGGCGCGGCGACCAATCGCGTTCCTGCA
ACAGGAGCACCGAGGAACAGCACAGGTCACTGCCCGCCACGGACAG

UFO12011.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:51:26
Subject Length Description Subject Range Query Range Score Percent Strand
nuf-RL 2735 CG33991-RL 741..1813 83..1146 4870 97.9 Plus
nuf-RA 2696 CG33991-RA 741..1813 83..1146 4870 97.9 Plus
nuf-RC 3446 CG33991-RC 741..1813 83..1146 4870 97.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:51:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14200162..14200447 215..500 1430 100 Plus
3L 28110227 3L 14230654..14230826 857..1026 715 98.3 Plus
3L 28110227 3L 14199966..14200100 83..217 675 100 Plus
3L 28110227 3L 14230175..14230310 723..858 665 99.3 Plus
3L 28110227 3L 14213087..14213203 607..723 585 100 Plus
3L 28110227 3L 14200739..14200807 501..569 345 100 Plus
3L 28110227 3L 14212191..14212232 567..608 210 100 Plus
Blast to na_te.dros performed on 2014-11-28 17:51:25 has no hits.

UFO12011.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:27 Download gff for UFO12011.5prime
Subject Subject Range Query Range Percent Splice Strand
nuf-RA 731..1809 77..1146 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:15 Download gff for UFO12011.5prime
Subject Subject Range Query Range Percent Splice Strand
nuf-RC 735..1813 77..1146 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:42 Download gff for UFO12011.5prime
Subject Subject Range Query Range Percent Splice Strand
nuf-RC 735..1813 77..1146 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:42 Download gff for UFO12011.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14200165..14200447 218..500 100 -> Plus
3L 14200739..14200807 501..569 100 -> Plus
3L 14212194..14212232 570..608 100 -> Plus
3L 14213089..14213203 609..723 100 -> Plus
3L 14230176..14230310 724..858 99 -> Plus
3L 14230656..14230919 859..1114 93 -> Plus
3L 14199966..14200100 83..217 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:15 Download gff for UFO12011.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14193066..14193200 83..217 100 -> Plus
arm_3L 14193265..14193547 218..500 100 -> Plus
arm_3L 14193839..14193907 501..569 100 -> Plus
arm_3L 14205294..14205332 570..608 100 -> Plus
arm_3L 14206189..14206303 609..723 100 -> Plus
arm_3L 14223276..14223410 724..858 99 -> Plus
arm_3L 14223756..14224019 859..1114 93 -> Plus