UFO12012.5prime Sequence
863 bp (719 high quality bases) assembled on 2012-06-29
> UFO12012.5prime
AGAACTCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCAT
AACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCGCAGA
TCTGTAAGCGCGGTTTGTTGATCAGCAACCGATTGGCGCCCGCCGCCCTC
CGCTGCAAATCAACATGGTTCTCCGAGGTGCAGATGGGCCCACCCGATGC
CATCTTGGGTGTCACGGAAGCCTTCAAGAAGGACACCAACCCCAAGAAGA
TCAACTTGGGCGCTGGCGCCTATCGCGATGACAACACCCAGCCCTTCGTG
CTCCCCAGTGTTCGGGAGGCCGAGAAGAGAGTGGTGAGCCGTAGTCTGGA
CAAGGAGTACGCCACAATCATCGGCATTCCCGAGTTCTACAACAAGGCCA
TCGAGCTGGCATTGGGCAAGGGATCCAAGCGTTTGGCGGCCAAGCACAAC
GTGACCGCCCAGTCCATCAGTGGAACTGGAGCTCTGCGCATCGGAGCCGC
CTTCCTGGCCAAGTTCTGGCAGGCAACCGCGAGATCTACATCCCGTCGCC
ATCGTGGGGCAACCATGTGGCCATTTTCGAGCACGCCGGTCTGCCGGTGA
ACCGATACCGCTACTACGACAGGACACCTGTGCCCTGACTTTGGCGGCCT
GATCGAGGATCTGAAGAAAATCCCGAGAAGAGCATTGTTCTCTGCACGCT
GCGCCCCACAACCCCACTGGAGTGGATCCCACTCTGGAGCAGTGGCGTGA
GAATCTCGGCTCTGGTCAGAACGCAATCTGTATCCCTTCATCGACATGGC
TACCAGCTTCGCCCACCGAAAAATTGACCGCGCACGCCCAGCGTTCCGCC
ACCTTCGAGCGAT
UFO12012.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:51:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Got2-RA | 1575 | CG4233-RA | 107..883 | 91..859 | 3425 | 97.3 | Plus |
| Got2-RB | 1560 | CG4233-RB | 160..868 | 159..859 | 3085 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:51:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1985471..1985721 | 666..419 | 1105 | 98.8 | Minus |
| 2L | 23513712 | 2L | 1985945..1986105 | 319..159 | 805 | 100 | Minus |
| 2L | 23513712 | 2L | 1985781..1985885 | 421..317 | 525 | 100 | Minus |
| 2L | 23513712 | 2L | 1985265..1985395 | 800..672 | 405 | 92.4 | Minus |
| 2L | 23513712 | 2L | 1987585..1987652 | 158..91 | 340 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 17:51:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy2 | 6841 | gypsy2 GYPSY2 6841bp | 3619..3678 | 394..335 | 111 | 65 | Minus |
UFO12012.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:28 Download gff for
UFO12012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Got2-RA | 103..845 | 79..818 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:17 Download gff for
UFO12012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Got2-RA | 100..842 | 79..818 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:45 Download gff for
UFO12012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Got2-RA | 100..842 | 79..818 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:45 Download gff for
UFO12012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1985257..1985401 | 667..806 | 93 | <- | Minus |
| 2L | 1985471..1985719 | 421..666 | 98 | <- | Minus |
| 2L | 1985782..1985883 | 319..420 | 100 | <- | Minus |
| 2L | 1985946..1986105 | 159..318 | 100 | <- | Minus |
| 2L | 1987585..1987659 | 79..158 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:17 Download gff for
UFO12012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1985257..1985401 | 667..806 | 93 | <- | Minus |
| arm_2L | 1985471..1985719 | 421..666 | 98 | <- | Minus |
| arm_2L | 1985782..1985883 | 319..420 | 100 | <- | Minus |
| arm_2L | 1985946..1986105 | 159..318 | 100 | <- | Minus |
| arm_2L | 1987585..1987659 | 79..158 | 93 | | Minus |
