UFO12015.5prime Sequence
1153 bp (1025 high quality bases) assembled on 2012-06-29
> UFO12015.5prime
TGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCG
TATAGCATACATTATACGAAGTTATCAGTCGACATGGATGCCAAGGAGTT
TCGGGAATTCGGCAAGGCCGCCATTGACTACATAGCCGACTATCTGGAGA
ATATTCGGGATGACGACGTACTGCCCAATGTGGAGCCAGGCTATCTGTTG
GACCTGCTGCCCACAGAGATGCCGGAAGAGCCCGAAGCGTGGAAGGATGT
CCTCGGCGACATTAGTCGCGTCATCAAGCCGGGACTGACCCACTGGCAGT
CGCCTCACATGCATGCCTACTACCCCACCAGCACCTCGTATCCCTCCATT
GTGGGCGAGATGCTGGCCAGCGGGTTCGGCGTCATCGGATTCAGCTGGAT
CTGCAGTCCCGCCTGCACAGAACTGGAGGTGGTGGTCATGGACTGGCTGG
CCAAGTTCCTGAAGCTGCCCGCACACTTCCAGCACGCCAGCGATGGACCA
GGAGGCGGGGTGATCCAGGGATCAGCTAGCGAGGCTGTGTTGGTGGCTGT
CCTAGCTGCCAGGGAACAAGCTGTGGCCAACTACAGGGAATCGCATCCGG
AGCTGAGCGAAAGTGAGGTGCGTGGCCGCTTGGTGGCCTACTCCTCGGAC
CAGAGTAACAGCTGCATTGAGAAGGCTGGAGTCCTGGCTGCCATGCCGAT
TCGATTGCTGCCGGCTGGAGAGGATTTCGTACTTAGAGGCGATACACTGA
GAGGAGCCATCGAGGAGGACGTGGCAGCGGGCAGGATTCCGGTGATCTGC
GTTGCCACTCTGGGCACCACGGGCACTTGTGCCTATGACGACATTGAATC
CCTGTCCGCTGTCTGCGAGGAATTCAAGGTGTGGCTCCATGTTGATGCCG
CGTATGCCGGTGGAGCCTTTGCTCTGGAAGAATGTCGGATTTGCGAAAGG
ATTGGATCGCGTGACTCGCTAACTTCAACCTGCACAAGTTCATGCTGGTC
AACTTCGATGCTCGGCCTTGTGCTAAGAATGCACCAGGTGGTCGACAGCT
TCAATGTGATCGCATCTACCTGAAGCACAAGCACGAAGTCAGTCGCAATT
CCTGACTTCGTCATGCAATCCCCTGGGCTCGCCGCTTCCGAGGCTCTTAA
AGA
UFO12015.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:51:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| amd-RA | 1792 | CG10501-RA | 161..1244 | 84..1152 | 4885 | 97.7 | Plus |
| amd-RB | 1749 | CG10501-RB | 305..1201 | 271..1152 | 3380 | 93.1 | Plus |
| Ddc-RD | 2797 | CG10697-RD | 1258..1468 | 270..480 | 230 | 73.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:51:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19112793..19113516 | 398..1109 | 2980 | 97.7 | Plus |
| 2L | 23513712 | 2L | 19112001..19112315 | 84..398 | 1575 | 100 | Plus |
| 2L | 23513712 | 2L | 19117812..19118022 | 480..270 | 230 | 73.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:51:53 has no hits.
UFO12015.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:34 Download gff for
UFO12015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amd-RA | 147..1241 | 72..1152 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:37 Download gff for
UFO12015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amd-RA | 150..1244 | 72..1152 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:56 Download gff for
UFO12015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amd-RA | 150..1244 | 72..1152 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:56 Download gff for
UFO12015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19112001..19112315 | 84..398 | 100 | -> | Plus |
| 2L | 19112794..19113562 | 399..1152 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:37 Download gff for
UFO12015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19112001..19112315 | 84..398 | 100 | -> | Plus |
| arm_2L | 19112794..19113562 | 399..1152 | 96 | | Plus |
