UFO12016.5prime Sequence
1136 bp (1043 high quality bases) assembled on 2012-06-29
> UFO12016.5prime
GAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGT
ATAGCATACATTATACGAAGTTATCAGTCGACATGTACAGAATAGCTGCC
CTTGTGCGGGATCGCGCCTGTCTCTTCACGTGCCAGCAGGCCTCGCAGAA
CCTGCAGCAGCAGCAGCCCCGCTTTTATAGTGCGCCAGGTCGCAGGGCCG
GCTTCTTCTCGCAGTTCTTCGACAACATGAAGGCGGAGATGGATAAGAAC
AAGGAGATCAAGGACAATATCCGAAAGTTCCGTGAGGAGGCCCAGAAGCT
GGAAGAATCGGATGCCCTGAAATCGGCGCGGCAAAAGTTTAACATTGTCG
AATCGGAGGCGCAAAAGTCGTCTAGCATGCTAAAGGAGCAGCTGGGCGCC
ATCAAGGAGCGCGTAGGCGATGTTCTGGAGGACGCCAGCAAATCCCACCT
GGCCAAAAAGGTTACCGAGGAGCTCTCGAAGAAGGCTAGGGGGGTCAGCG
ACACGATCTCCGACACCAGTGGCAAGCTGGGCCAGACCAGCGCATTCCAG
GCTATCTCTAACACGACGACGACCATCAAGAAGGAGATGGACAGCGCGAG
CATAGAGAATCGTGTCTATCGTGCTCCTGCCAAGTTGCGAAAGCGCGTCC
AGCTCGTCATGAGCGATAGTGATCGCGTTGTGGAGCCCAACACGGAAGCC
ACTGGTATGGAGCTGCACAAGGACTCCAAGTTCTACGAGTCGTGGGAGAA
CTTCAAGAACAACAATACCTACGTGAACAAAGTGCTTGACTGGAAGGTTA
AATACGACGAGTCCGAGAACCCTGTTATTCGTGCCTCCCGCCTGCTGACC
GATAAAGTGTCCGACGTCATGGGTGGACTCTTTTCAAAGACAGAGCTTTC
GGAAACGATGACGGAGCTGGTGAAAATCGATCCGAGCTTTGATCAGATGA
TTTCCTCCGCGATTGCGAACGGACATCATTCCAAATATCTGGATCGATGT
CGTGGGGATCTGGAGATTCTGAGATGTGCTTTGAAAGCACTTCATATTTA
TCGCAAATCCATAGAGCTAGAGCGGCGTGTTACTGACTCAGATCCTCGAC
TCGAGAACTGGACCTGCCATGGGCCAAGTTATGGAA
UFO12016.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:51:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11779-RE | 2474 | CG11779-RE | 151..1140 | 82..1060 | 4605 | 98.4 | Plus |
| CG11779-RB | 2679 | CG11779-RB | 356..1345 | 82..1060 | 4605 | 98.4 | Plus |
| CG11779-RA | 2281 | CG11779-RA | 263..1255 | 79..1060 | 4590 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:51:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19155863..19156406 | 706..163 | 2720 | 100 | Minus |
| 3R | 32079331 | 3R | 19155512..19155798 | 988..704 | 1305 | 98.6 | Minus |
| 3R | 32079331 | 3R | 19156466..19156547 | 166..85 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:51:56 has no hits.
UFO12016.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:35 Download gff for
UFO12016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11779-RB | 353..1352 | 75..1066 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:39 Download gff for
UFO12016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11779-RB | 353..1352 | 75..1066 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:57 Download gff for
UFO12016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11779-RB | 353..1352 | 75..1066 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:57 Download gff for
UFO12016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19155424..19155797 | 705..1066 | 94 | <- | Minus |
| 3R | 19155865..19156402 | 167..704 | 100 | <- | Minus |
| 3R | 19156466..19156555 | 74..166 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:39 Download gff for
UFO12016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14981146..14981519 | 705..1066 | 94 | <- | Minus |
| arm_3R | 14981587..14982124 | 167..704 | 100 | <- | Minus |
| arm_3R | 14982188..14982277 | 74..166 | 94 | | Minus |
