UFO12017.5prime Sequence
936 bp (779 high quality bases) assembled on 2012-06-29
> UFO12017.5prime
TGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCG
TATAGCATACATTATACGAAGTTATCAGTCGACATGCATTGCGGCCGCGT
ATTGATCAAGTATTTACAATTTGACATATTGGTAATTTTGGCAACTATAA
GGCTTGGGAATGCACATTTTAATGGACCACGCAGTCGGGAAAGAAATTTA
AGCAATAGCAATGGAGTAAAAACTGAAGAAGCATCACATATCGTAAATCC
CAGTGGTGTTAGAACAGTTGGTGAAGTGTTTGTGCCAAAAACCTTTTCAC
TTAACTCACAGGAACCGACATGCGAACAGCTCCGCGCCATGTGGATTTTT
TCAAAGAGGCAATCTCGAGCTGCAGAAATAACCAATGAAATACCAACATA
TAGGGATCCCTTCACATATAATGTTTGGGAGCCTCTGTTTTTGAACTCTC
GAATGCTGGGATCATTACGAATGAGCGCAAGGGAAAAAGCCAGGTCACCT
GTTTTTGGCCGTGTTCTCAATCGAGAGCCAAATGGACCGCAGCGTATTCC
ATTTGAACACCATCGAAGATTGGGTGAATTTGGATCAAGCGCTTCTGGTT
TAAGTCACTCTCGTTATTATGGAGCTGAAATGCGACCACAAACGGGAGCT
TCCTCAATTCGTAGATCAAGCCAAAATCGGTATATGGGAATCCCAAATAT
TACTGGAAATATCAAAAAGAAAGCCAAAATTCAGTGCTAAAACAAGAAGC
TTTCAAAGCTCAAAGAGCTAATTTGGACTGGAGAAGCCAGGATTAACAGA
GCACGTCGAGAATGAGGAGTGGCAGCGCGTTCTGCTGCCCTTAAGAATTG
CTAACGGAAAAACTTATTCGAATTATACCCATCAGTCGGTAGCTTATCTG
ATTCTCCATATTGGAATGAAATCGAAGTCTGAAAAA
UFO12017.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:52:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32017-RD | 3875 | CG32017-RD | 502..1360 | 84..929 | 3710 | 96.9 | Plus |
| CG32017-RC | 3542 | CG32017-RC | 169..1027 | 84..929 | 3710 | 96.9 | Plus |
| CG32017-RB | 3812 | CG32017-RB | 439..1297 | 84..929 | 3710 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:51:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 1140961..1141367 | 862..464 | 1460 | 95.1 | Minus |
| 4 | 1348131 | 4 | 1143627..1143869 | 346..104 | 1215 | 100 | Minus |
| 4 | 1348131 | 4 | 1143449..1143565 | 463..347 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:52:00 has no hits.
UFO12017.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:35 Download gff for
UFO12017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32017-RC | 425..1293 | 76..931 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:42 Download gff for
UFO12017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32017-RB | 432..1300 | 76..931 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:58 Download gff for
UFO12017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32017-RB | 432..1300 | 76..931 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:58 Download gff for
UFO12017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 1140960..1141367 | 464..862 | 96 | <- | Minus |
| 4 | 1143449..1143565 | 347..463 | 100 | <- | Minus |
| 4 | 1143627..1143868 | 105..346 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:42 Download gff for
UFO12017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 1161586..1161993 | 464..862 | 96 | <- | Minus |
| arm_4 | 1164075..1164191 | 347..463 | 100 | <- | Minus |
| arm_4 | 1164253..1164494 | 105..346 | 100 | <- | Minus |
