UFO12020.5prime Sequence
1198 bp (1076 high quality bases) assembled on 2012-06-29
> UFO12020.5prime
CTCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACT
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGACAATGCTAGA
AGGCATGACGTCGATTGACCTGGGCTCCAGTCCCATGCAAGAAACCACTG
GCGACATGAACGACGTCCTCCCCGATGAGCTCATGGAGTCGCCGGAGGAA
AGATACGAGCGCCTACTGCGTCGTGCCCAAGTCGAGGATTTGACGGAGGT
GTCCGGCATCGGCTGCCTTTACCAGAGCGGCGTGGACCGCCTGGGTCGGC
CTGTGATTGTGTTCTGCGGCAAATGGTTCCCCGCCCAGAACATTGACCTG
GAAAAGGCCTTGCTATATCTGATTAAGCTACTGGATCCCATCGTTAAAGG
AGACTATGTCATCTCGTACTTCCACACGCTGACATCCACGAACAACTATC
CATCGCTGCACTGGCTGCGTGAGGTCTACAGTGTGTTGCCTTACAAATAC
AAGAAGAACCTGAAGGCCTTCTATATCGTGCACCCCACTTTCTGGACTAA
GATGATGACCTGGTGGTTCACCACGTTCATGGCGCCTGCCATCAAGGCCA
AGGTGCACTCGCTTCCGGGTGTGGAGCACCTGTACTCGGCCATCACCAAG
GATCAGCTGGAAATTCCCGCCTACATCACCGAGTACGACATGGCGACCAA
TGGCCTGCATTACTTCAATCCTGTGCCGACTGCCTCGGCAAGCTTTCTAG
ACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCAT
AATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGT
GCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGA
ACAAATCCAGATGGAGTTCTGAGTCATTACTGGATCTATCAACAGGAGTC
CAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTA
CTGTTGTAATTCATTAGCATTCTGCCGACATGCAGCATCACAAACGCATG
ATGAACCTGAATCGCAGCGGCATCAGCACTGTGCCTGGCGTATAATATTT
GCCATGTGAAACGGGGGCCAAAAGTGTCAATGCCGTTAAATCAACCTGGG
GAACTCACCAGGATGCTGAACCGAAACTATTTCTCAATATATACCTTT
UFO12020.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:52:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18812-RE | 2143 | CG18812-RE | 507..1157 | 87..737 | 3255 | 100 | Plus |
| CG18812-RA | 2143 | CG18812-RA | 507..1157 | 87..737 | 3255 | 100 | Plus |
| CG18812-RD | 1719 | CG18812-RD | 359..900 | 196..737 | 2710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:52:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7719376..7719574 | 695..497 | 995 | 100 | Minus |
| 2R | 25286936 | 2R | 7719842..7719998 | 357..201 | 785 | 100 | Minus |
| 2R | 25286936 | 2R | 7719641..7719782 | 496..355 | 710 | 100 | Minus |
| 2R | 25286936 | 2R | 7722034..7722149 | 202..87 | 580 | 100 | Minus |
| 2R | 25286936 | 2R | 7719265..7719307 | 737..695 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:52:09 has no hits.
UFO12020.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:37 Download gff for
UFO12020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18812-RA | 494..1154 | 78..737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:48 Download gff for
UFO12020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18812-RA | 497..1157 | 78..737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:04 Download gff for
UFO12020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18812-RA | 497..1157 | 78..737 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:04 Download gff for
UFO12020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7719265..7719306 | 696..737 | 100 | <- | Minus |
| 2R | 7719376..7719574 | 497..695 | 100 | <- | Minus |
| 2R | 7719641..7719780 | 357..496 | 100 | <- | Minus |
| 2R | 7719843..7719996 | 203..356 | 100 | <- | Minus |
| 2R | 7722034..7722159 | 78..202 | 97 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:48 Download gff for
UFO12020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3606770..3606811 | 696..737 | 100 | <- | Minus |
| arm_2R | 3606881..3607079 | 497..695 | 100 | <- | Minus |
| arm_2R | 3607146..3607285 | 357..496 | 100 | <- | Minus |
| arm_2R | 3607348..3607501 | 203..356 | 100 | <- | Minus |
| arm_2R | 3609539..3609664 | 78..202 | 97 | == | Minus |
