UFO12021.5prime Sequence
1123 bp (1024 high quality bases) assembled on 2012-06-29
> UFO12021.5prime
TGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCG
TATAGCATACATTATACGAAGTTATCAGTCGACATGTCTAAAACGCCGTC
GTTCGACAAGGATCGCGATTACATAGGCTTTGCCACGCTTCCAGAGCAAG
TGCACCGGAAGTCGGTGAAGCGGGGCTTCGAGTTCACCCTCATGGTGGTC
GGCGAGTCCGGACTGGGCAAGTCCACGCTGATCAACAGTCTCTTTCTGGG
CGATCTCTACAAGAACCGGCAGATGCCCAATGTGGAGGAGCGCATCGAGA
AGACGACGAAGGTGGAGAAGAAGACGATGGACATCGAGGAGCGGGGCGTC
CGGCTCCGGCTGACGGTGGTGGACACCCCGGGATTCGGGGATGCCATCAA
CTGTGAGGACAGCTGGCGCGTCTGCACCCAGTACATCGACGAGCAGTTCC
GCCAGTACTTCACCGACGAGAGCGGCCTGAATCGCCGCAACATCCAGGAC
AATCGGGTGCACTGCTGCCTCTACTTCGTGCCGCCATGGGGCCACAGCCT
GCGACAGATGGACCTCGATTTGATACGGCGGCTGCACCGCAAGGTGAACA
TCGTGCTGGTGATCGGCAAGGCCGATTGCCTCAACAAGCAGGAGGTGCGC
AAGCTGAAGGAGCGCATCCTGCAGGACCTGGAGGACAACCACATCCAGCT
GTATCAGTTCCCCGAATGCGACTCCGACGAGGACGACGACTTCAAGCAGC
AGGACCGCGAACTGAAAGGCCTCCATTCCGTTCGCCGTCGTCGGCAGCAA
CACCATTCTGGAGGTGGCCGGCAAGAAAGTCCGAGGGCGCCAGTATCCGT
GGGGCGTGGTAAACGTGGAGGATCCCGGAGCACAGCGACTTCATCAAGCT
GCGCACCTTTCTTGATATCCACGCACATGCAGGACCTCAAGACACACGCA
GACGTGCACTACGAGAACTTCGGCGCAGTGCATCTCGCAGATTCGCAGCA
CGCGCTGCGTGAGCGCGCAGTTGAAGCGGACTCGATTAGCTCGACAATGA
TCGACGCGCATCTCGGAGAACGACATGCTGCTCTGCCAAGACCAGGAGAT
ATAAGAGATGCAGACTGCCTCAC
UFO12021.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:52:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sep4-RG | 2433 | CG9699-RG | 369..1402 | 82..1101 | 4625 | 97.5 | Plus |
| Sep4-RC | 2896 | CG9699-RC | 838..1865 | 88..1101 | 4595 | 97.5 | Plus |
| Sep4-RE | 2915 | CG9699-RE | 857..1884 | 88..1101 | 4595 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:52:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16686310..16686769 | 547..88 | 2300 | 100 | Minus |
| X | 23542271 | X | 16685520..16685913 | 941..545 | 1820 | 99 | Minus |
| X | 23542271 | X | 21359566..21359675 | 150..259 | 340 | 87.3 | Plus |
| X | 23542271 | X | 16685311..16685411 | 1045..951 | 260 | 93.1 | Minus |
| X | 23542271 | X | 21359805..21359880 | 323..398 | 200 | 84.2 | Plus |
| X | 23542271 | X | 21360388..21360512 | 781..906 | 190 | 78.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:52:12 has no hits.
UFO12021.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:38 Download gff for
UFO12021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sep4-RG | 345..1348 | 76..1069 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:50 Download gff for
UFO12021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sep4-RG | 364..1367 | 76..1069 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:06 Download gff for
UFO12021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sep4-RG | 364..1367 | 76..1069 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:06 Download gff for
UFO12021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16685508..16685910 | 548..950 | 98 | <- | Minus |
| X | 16686310..16686769 | 86..547 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:50 Download gff for
UFO12021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16579541..16579943 | 548..950 | 98 | <- | Minus |
| arm_X | 16580343..16580802 | 86..547 | 99 | <- | Minus |
