UFO12023.5prime Sequence
1159 bp (1052 high quality bases) assembled on 2012-06-29
> UFO12023.5prime
CTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTC
GTATAGCATACATTATACGAAGTTATCAGTCGACATGAAACCCATTTGCT
TCGCACTCTGCGTATTTTCGCTAGGCCTTTTCTATTTGGCCAGCGCTGAG
ATTGGTGAAAATGTGAAGATCCAGACGTACAAGAAGTATAGTTCATCCTG
CAAGGAGTTGAACCCAAAGAAGAGCGGTGTCCAGAAGATCCAAGTGGGCT
CCGATGTAATCGAAGTGTACTGCGATGTGACAATCGCCGGAAAGGGCTGG
CTGGTCGTCCAGCGAAGAGTCAGTGTGGAGGAGAACTTCTACCGCAATTG
GACCTCTTATCAGACGGGTTTCGGTGACCTTAAGGGTAACTTCTTCATCG
GATTGAATAATCTGAACAAGATCTCGTCCCTGCAACCCCAAGAGTTGTAT
ATTGAGTTGGTGGACTTTGCTGGCGAGAAGCGGTATGCCCACTACAGTGT
GTTTCACGTGGGCAACGTGTACAGTAATTACCCGATAACCCAGCTGGGCG
CGTACAGTGGAACCGCCGGAGACAGTTTGAGCTATCATCTGTACCAACCT
TTCAGCACCTTCGATAGGGATAACGACAATGCCACTATCAACTGTGCTGC
CAGATATATGGGAGCCTGGTGGTACAGAGAATGCCTTAGCAGCAATCTGA
ATGGTGCATATCTGGGTGGAAACCACACCGATCCCGCGCTGTTTGGCTCT
GGAATCGTTTGGGGAGAATGGAAGGGCTTCACATACAGCTACAAGACTGT
TAACATTATGGTGCGACCAAAAGCAAGCTTTCTAGACCATTCGTTTGGCG
CGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAAT
CACAACTAGCCTGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCA
ATAAAAACGCCCGGCGGCACCGGAGCGTTCTGAACAAATCCAGATGGAGT
TCTGGAGGTCATTACTGGATCTATCAACAGGAGTCAGGCGAGCTCGATAT
CAAATACGCCCCGCCCTGCACTCATCGCAGTACTGTTGTAATTCATTAAG
CATTCTGCGACTGGAAGCCATTCAAACGGCATGGTGAACTGAATCGCAGC
GCATCGCAC
UFO12023.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:51:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5550-RA | 926 | CG5550-RA | 26..763 | 85..822 | 3690 | 100 | Plus |
| CG5550-RB | 938 | CG5550-RB | 26..775 | 85..822 | 3560 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:51:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16816614..16817221 | 85..692 | 3040 | 100 | Plus |
| 2R | 25286936 | 2R | 16817281..16817414 | 689..822 | 670 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:51:46 has no hits.
UFO12023.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:33 Download gff for
UFO12023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5550-RA | 17..765 | 77..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:32 Download gff for
UFO12023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5550-RA | 19..767 | 77..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:53 Download gff for
UFO12023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5550-RA | 19..767 | 77..827 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:53 Download gff for
UFO12023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16816607..16817221 | 77..692 | 99 | -> | Plus |
| 2R | 16817285..16817427 | 693..839 | 94 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:32 Download gff for
UFO12023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12704112..12704726 | 77..692 | 99 | -> | Plus |
| arm_2R | 12704790..12704932 | 693..839 | 94 | <- | Plus |
