Clone UFO12024 Report

Search the DGRC for UFO12024

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:120
Well:24
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/Transcriptpdm2-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO12024.5prime Sequence

556 bp (440 high quality bases) assembled on 2012-06-29

> UFO12024.5prime
CTCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACT
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGATGGTGCTACA
GCAACAACAACAACAGCGTCTCTGGGATGCAACAACAACGAGCAACACAA
ATACACAAACACAGCAATCGGCGAATGTGGAAAGCACGCCAACAAAAGTT
TGCCATCAGGAAAATGCAGCGACACACACATTTATGCGGCACATGTCGAA
CTCACCAACACCGCCCTCGCCACTGCGTTCGCTATCAGACTGCGGAAAGA
GCTTCGAGGAGGAGGAACTGGAGCTGGGCGAGAACTGCGAGATGCCACAG
AATCTGAGCAGCAAGCGCCAGGCCAGGGAACTAGACTCTGAGCTGGAAAA
CGAGGTCCTGGATCTGGCACCGCCACCGAAGAAATTGGCCCGAGGAGCAA
GAGGAGGGAAAAGGTGGCCAGTGTCAATCCACCCACAGCCCGTTGCATTT
GCAACGGAAGGAAAATGCATCAAGCTCTGCAACTGCAGTTGCCACAGCTA
CATCGA

UFO12024.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:51:50
Subject Length Description Subject Range Query Range Score Percent Strand
pdm2-RA 2171 CG12287-RA 194..657 87..556 2140 97.9 Plus
pdm2-RD 4286 CG12287-RD 2454..2772 232..556 1415 96.9 Plus
pdm2-RC 3729 CG12287-RC 1897..2215 232..556 1415 96.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:51:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12684528..12684792 286..556 1015 95.9 Plus
2L 23513712 2L 12678797..12678941 87..231 725 100 Plus
2L 23513712 2L 12680777..12680833 232..288 285 100 Plus
Blast to na_te.dros performed on 2014-11-28 17:51:49 has no hits.

UFO12024.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:33 Download gff for UFO12024.5prime
Subject Subject Range Query Range Percent Splice Strand
pdm2-RA 192..654 87..555 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:34 Download gff for UFO12024.5prime
Subject Subject Range Query Range Percent Splice Strand
pdm2-RA 194..656 87..555 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:54 Download gff for UFO12024.5prime
Subject Subject Range Query Range Percent Splice Strand
pdm2-RA 194..656 87..555 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:54 Download gff for UFO12024.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 12678797..12678941 87..231 100 -> Plus
2L 12680777..12680833 232..288 100 -> Plus
2L 12684531..12684791 289..555 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:34 Download gff for UFO12024.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12678797..12678941 87..231 100 -> Plus
arm_2L 12680777..12680833 232..288 100 -> Plus
arm_2L 12684531..12684791 289..555 96   Plus