UFO12024.5prime Sequence
556 bp (440 high quality bases) assembled on 2012-06-29
> UFO12024.5prime
CTCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACT
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGATGGTGCTACA
GCAACAACAACAACAGCGTCTCTGGGATGCAACAACAACGAGCAACACAA
ATACACAAACACAGCAATCGGCGAATGTGGAAAGCACGCCAACAAAAGTT
TGCCATCAGGAAAATGCAGCGACACACACATTTATGCGGCACATGTCGAA
CTCACCAACACCGCCCTCGCCACTGCGTTCGCTATCAGACTGCGGAAAGA
GCTTCGAGGAGGAGGAACTGGAGCTGGGCGAGAACTGCGAGATGCCACAG
AATCTGAGCAGCAAGCGCCAGGCCAGGGAACTAGACTCTGAGCTGGAAAA
CGAGGTCCTGGATCTGGCACCGCCACCGAAGAAATTGGCCCGAGGAGCAA
GAGGAGGGAAAAGGTGGCCAGTGTCAATCCACCCACAGCCCGTTGCATTT
GCAACGGAAGGAAAATGCATCAAGCTCTGCAACTGCAGTTGCCACAGCTA
CATCGA
UFO12024.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:51:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pdm2-RA | 2171 | CG12287-RA | 194..657 | 87..556 | 2140 | 97.9 | Plus |
pdm2-RD | 4286 | CG12287-RD | 2454..2772 | 232..556 | 1415 | 96.9 | Plus |
pdm2-RC | 3729 | CG12287-RC | 1897..2215 | 232..556 | 1415 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:51:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12684528..12684792 | 286..556 | 1015 | 95.9 | Plus |
2L | 23513712 | 2L | 12678797..12678941 | 87..231 | 725 | 100 | Plus |
2L | 23513712 | 2L | 12680777..12680833 | 232..288 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:51:49 has no hits.
UFO12024.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:33 Download gff for
UFO12024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pdm2-RA | 192..654 | 87..555 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:34 Download gff for
UFO12024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pdm2-RA | 194..656 | 87..555 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:54 Download gff for
UFO12024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pdm2-RA | 194..656 | 87..555 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:54 Download gff for
UFO12024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12678797..12678941 | 87..231 | 100 | -> | Plus |
2L | 12680777..12680833 | 232..288 | 100 | -> | Plus |
2L | 12684531..12684791 | 289..555 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:34 Download gff for
UFO12024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12678797..12678941 | 87..231 | 100 | -> | Plus |
arm_2L | 12680777..12680833 | 232..288 | 100 | -> | Plus |
arm_2L | 12684531..12684791 | 289..555 | 96 | | Plus |