UFO12026.5prime Sequence
1127 bp (1026 high quality bases) assembled on 2012-06-29
> UFO12026.5prime
TGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCG
TATAGCATACATTATACGAAGTTATCAGTCGACATGCACGAGAGACAAGT
GAAGAAGTTGAAGGGCAGCCATTATGTGGCCACGCACGGTCGCCTCACTC
CGGATCCGCCCTACGTCCACTCGAACCGCGGCTATTCCACCGACGGCGAT
GAGACCCACTCCCACCGGGCGCCCTCGGAGCGCACCTATTCGGAGTACAC
GTTGACCCACGAGCGCATCTCGCCGCAGTACAATGGTTCGCGCAAGAAGC
GCTCCTCATCCTCGAATGGAAACCATCAGCATCAGCACCTGCAGAGCAGC
TACAGCCACAGTCAGATGGGCCTCTCCAGTTCGCCGGACAACGGAGGACC
TCGCTCCCTCAGCGGACCGCCGCCCACGCGCCAGCCACCGCGTGCTCCGT
CCGCCCTGAGCTATGACCAGGCTGGTGACGCCGGCAGCGACATATATGTG
ACCAGTGCCGCCTACAAGGCGCCCTCCGAGATCAGTCGCTACAGTCAGCG
TCCAGTGTCGCGAGGAGCTCCACGGAGTGTTTACTCCGTGGCCAGTACGG
CCAAAACCGGACGCAGTGCGCGCTCGACGACTCGGCGAGGCGCCAAAGTG
GAAACCATGTCCGCGCCGAATCCATTTTGCCCCAATGTCAAGGGCGTGTG
CTGTCTGATGCTGTTGCTCAACTTGGGCCTGATCCTGGTGACGCTAGGAT
TCGTCATTGTGGTGCAGTTCTATGAGCCACTGTACGTGTGGATACTGGGA
ATTGTGTTCCTGGTCTTCGGCTTCCTCACGCTAATCGGCTGCATGATCTA
CTGTGTGTACGTGTTCCGGGATGCGAAGACGCCATCGCAGTGCGCAACGA
GGATCTCTACTGGACGCGGCACTGGCAGAGAATATCGGATACACGCCGCA
GAGATCAACTACAGGCGACAGTACGATGCCTACTCGATCGCTATTCGGTT
AGCAGCTGATGGCAAATACTCGGATCGCGAGAGCAGCGATACGCAGCTTT
CTAGACATCGTTGGCGCGCGGGTCCAAGTATGGTCTATCTATCATATCTA
TCATATTCCAACTAGCCTAGGAATCCT
UFO12026.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:52:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14830-RC | 1773 | CG14830-RC | 421..1389 | 84..1042 | 4580 | 98.9 | Plus |
| CG14830-RB | 2038 | CG14830-RB | 686..1654 | 84..1042 | 4580 | 98.9 | Plus |
| CG14830-RA | 1776 | CG14830-RA | 424..1392 | 84..1042 | 4580 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:52:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7251680..7252108 | 535..107 | 2130 | 99.8 | Minus |
| 3L | 28110227 | 3L | 7251111..7251621 | 1034..533 | 2110 | 97.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:52:26 has no hits.
UFO12026.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:41 Download gff for
UFO12026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14830-RA | 417..1394 | 76..1049 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:58 Download gff for
UFO12026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14830-RA | 420..1397 | 76..1049 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:13 Download gff for
UFO12026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14830-RA | 420..1397 | 76..1049 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:13 Download gff for
UFO12026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7251097..7251618 | 536..1049 | 97 | <- | Minus |
| 3L | 7251680..7252108 | 107..535 | 99 | <- | Minus |
| 3L | 7252176..7252198 | 84..106 | 100 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:58 Download gff for
UFO12026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7244197..7244718 | 536..1049 | 97 | <- | Minus |
| arm_3L | 7244780..7245208 | 107..535 | 99 | <- | Minus |
| arm_3L | 7245276..7245298 | 84..106 | 100 | == | Minus |
