UFO12027.5prime Sequence
1168 bp (1074 high quality bases) assembled on 2012-06-29
> UFO12027.5prime
GAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGT
ATAGCATACATTATACGAAGTTATCAGTCGACATGGAGACTTCTGCCACC
ACAAAGACAACCACGCTCACCACCCCCGCCAAACTGTATGGCAAGGATCT
GAGTGAGTACGATGATGTGGATGTGGAGAGCCTGCTGGCCCAGCTCTCCC
CCGAGGAGATAACCATACTGGCCAAAGAAGTGGATCCCGATGACAACTTC
CTGCCGCCAGACCAGCGCAATAGCTATGAGTGCACCAAGGAAGCCACCGG
GCCTCTCAATCGCAAGCAGCTGATCGAGCACATCAATAAGCAGGCCATCG
AGACCCCGGATCAGCCGGAGTTCGAGCCGTTCGTTCAGGGCAAGGTTCGT
GGAAAGAAGTGGGTCCCACCGCCAAGGGATGCCCGCGACATCGAGGCCGA
AGAACAAATCGCCATTGACATGGGCGAGGAGTACGAACACGCCCTTAACG
ATGCCACGCAGGAGGAGATCATCGATCTGGCCGCCATCCTCGGCTTCCAC
TCGATGATGAATCAGGACCAGTACCACGCCTCCTTGCTCAACAAGGGTCA
GCCCGTGGGCCTGGGATGGGATGGCATTACGAAATCCACTCAGCAGAAGC
TCTTCCCTATGGATCCGCCCAACAACACAGATGTGGAGGAATCCATCAAG
CGGGTCAAGGACGATGACTCCAAGCTGATTGACCTCAACTTGAACAACAT
TAAGAACATCTCGGACGAGAAACTCGAGCAACTGTTTGCCGCACTGCCTC
AGAACGAACATTTGGAAGTCCTCTCGCTAACAAATGTGGGCCTCACCGAC
AAGACAGCCCTCCTGTTAGCCGCGGCCATAGAGAAGAGCAAAACCCTGAG
AGTATTAAATGTCGAGACCAACTTTATCAGTCCGCCCGTGATTGTTAAGT
TGGTGCAAGCCCTGCTCAAGTGCCACACCATCGAGGAGTTTAGGGCCTCC
ATCAGCGGTCTGCGGTTCTGGCCACAAGATCGAGATGGAAATCACCGACC
TGGTGGAAAAAGAACTCGTCGCTGCTGCGCCCTTGCCTTGCACCTGAGTT
CCACGACGCCCGCCACCGATTGACCGCTCCACCTGCAACGCACATCGAAC
GAAATACGCGTGTGAACG
UFO12027.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:52:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tmod-RA | 2537 | CG1539-RA | 295..1363 | 81..1148 | 5080 | 98.7 | Plus |
| tmod-RI | 3000 | CG1539-RI | 763..1826 | 86..1148 | 5055 | 98.7 | Plus |
| tmod-RN | 2699 | CG1539-RN | 556..1619 | 86..1148 | 5055 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:52:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30572023..30572535 | 242..754 | 2565 | 100 | Plus |
| 3R | 32079331 | 3R | 30572597..30572845 | 753..1001 | 1245 | 100 | Plus |
| 3R | 32079331 | 3R | 30571807..30571962 | 87..242 | 780 | 100 | Plus |
| 3R | 32079331 | 3R | 30572922..30573048 | 1003..1129 | 355 | 92.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:52:29 has no hits.
UFO12027.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:41 Download gff for
UFO12027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tmod-RA | 298..1376 | 75..1153 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:00 Download gff for
UFO12027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tmod-RA | 290..1368 | 75..1153 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:14 Download gff for
UFO12027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tmod-RA | 290..1368 | 75..1153 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:14 Download gff for
UFO12027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30571807..30571961 | 87..241 | 100 | -> | Plus |
| 3R | 30572023..30572535 | 242..754 | 100 | -> | Plus |
| 3R | 30572599..30572850 | 755..1005 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:00 Download gff for
UFO12027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26397529..26397683 | 87..241 | 100 | -> | Plus |
| arm_3R | 26397745..26398257 | 242..754 | 100 | -> | Plus |
| arm_3R | 26398321..26398572 | 755..1005 | 99 | -> | Plus |
