UFO12028.5prime Sequence
1167 bp (1035 high quality bases) assembled on 2012-06-29
> UFO12028.5prime
CTCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACT
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCCCTCCGGTAT
AAGACCCATCGATGTTCTGCTGGAACGTGCCGGTGTGCGCGGCCACCAGC
GTGCACCGTCCGACTCCAAGGAGTTCCATGAGGTGACCAAACGGGATGCA
CTTCGTCTGCTGGAGCACGATGTGGACCGTCTGCTGGAGACCACTGAGAA
GGCCCGCCAGCCTGCCCTCAAGGCAGAAATGGGTCGTTTCGCCGATCTGT
TCGGACGTTTCATTCAGGAAGAGGGTCCCGCATTGGACTGGAACAAGATT
CAGAAGCTGCCTGAGAATGCTGTGATGAACTACTCGAATCTTAAGTCGCC
CAAGAACGAGCAGATCCGCAACATGTTGGATAAATTGGTGGTCATCAAGC
TGAACGGTGGTTTGGGCACCTCAATGGGTTGCCATGGTCCCAAGAGTGTG
ATTCCTGTGCGTTCGGATCTTACTTTCCTGGATCTGACCGTGCAGCAAAT
CGAGCATCTCAACAAGACCTACGATGCCAATGTTCCGCTGGTACTGATGA
ACTCCTTTAACACCGACGAGGATACCGAGAAGATCGTGCGCAAGTACAAA
GGATTCCGTGTGCAGATCCACACCTTCAACCAGAGCTGCTTCCCGCGCAT
TAGTCGCGAGCACTACCTGCCGGTGGCCAAAGACTTTGATGTCGAAAAGG
ATATGGAAGCCTGGTATCCACCTGGACACGGTGACTTCTACGATACCTTC
CGCAACTCTGGCCTGCTGAAGAAGTTCATCGAGGAGGGCCGCGAGTATTG
TTTCTTGTCCAACATCGATAACCTGGCGCCACCGTCGATCTGAACATCCT
CAATAAGCTGGTGGGCGAGGAGCGGGCCACTACTCCAGTGGAGTTTGTCA
TGGAGTCACCGACAGACCCGTGCTGACGTTAAGGTGTACTCTCATTCAAA
TGAAAACAAGCTGCGCTGTTGAAATGCTCAAGTGCCACAGAGCATGTGAA
TGACTTAAGTCGGTTAAGACTTTCAGTTCTTTAAACACAACAACATTGGC
CACCTGCAGGCATTGATCGCGTTGCGTGAGCGTAACCTAAACATGAAATT
ATTGTGAAACACAAGAA
UFO12028.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:52:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| UGP-RE | 2686 | CG4347-RE | 254..1352 | 87..1166 | 4890 | 97.5 | Plus |
| UGP-RA | 2102 | CG4347-RA | 254..1358 | 87..1166 | 4820 | 96.9 | Plus |
| UGP-RD | 2093 | CG4347-RD | 322..1372 | 135..1166 | 4650 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:52:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9352882..9353230 | 760..412 | 1745 | 100 | Minus |
| 3L | 28110227 | 3L | 9352599..9352827 | 986..761 | 995 | 98.7 | Minus |
| 3L | 28110227 | 3L | 9353888..9354074 | 321..135 | 935 | 100 | Minus |
| 3L | 28110227 | 3L | 9353738..9353831 | 413..320 | 470 | 100 | Minus |
| 3L | 28110227 | 3L | 9357581..9357630 | 136..87 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:52:33 has no hits.
UFO12028.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:42 Download gff for
UFO12028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RE | 252..1360 | 77..1167 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:03 Download gff for
UFO12028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RE | 244..1352 | 77..1167 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:16 Download gff for
UFO12028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RE | 244..1352 | 77..1167 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:16 Download gff for
UFO12028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9352602..9352827 | 761..983 | 98 | <- | Minus |
| 3L | 9352882..9353228 | 414..760 | 100 | <- | Minus |
| 3L | 9353738..9353829 | 322..413 | 100 | <- | Minus |
| 3L | 9353888..9354074 | 135..321 | 100 | <- | Minus |
| 3L | 9357583..9357630 | 87..134 | 100 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:03 Download gff for
UFO12028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9345702..9345927 | 761..983 | 98 | <- | Minus |
| arm_3L | 9345982..9346328 | 414..760 | 100 | <- | Minus |
| arm_3L | 9346838..9346929 | 322..413 | 100 | <- | Minus |
| arm_3L | 9346988..9347174 | 135..321 | 100 | <- | Minus |
| arm_3L | 9350683..9350730 | 87..134 | 100 | == | Minus |
