UFO12030.5prime Sequence
1196 bp (1076 high quality bases) assembled on 2012-06-29
> UFO12030.5prime
CTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTC
GTATAGCATACATTATACGAAGTTATCAGTCGACATGGATGCACGCAAGT
TTTCTACCCACATATTGGATACTTCGGTGGGAAAGGCGGCAGCCAATGTG
AGAGTAACAGTTTCCAGGCTGGACGAGATTCAGGAATGGAGATCCCTTCG
GGCGGCCCAAACTGATGCGGATGGTCGCTGCCTGCTCTTGGAACCTGGTC
AATTTCCCGGCGGGATCTATAAGCTGACCTTTCACGTGGGCGCCTATTAC
GCGGAGCGCAATGTGAGGACACTTTATCCAGCAATTGACTTGATTGTGGA
TTGCAGTGAGAATCAGAACTATCACATTCCTTTGTTACTCAATCCCTTTG
GGTATTCCACATATCGTGGAACAGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCAC
CAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGG
AGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGA
TATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCA
TTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTG
AATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCA
TGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCA
AACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCA
ATAAACCCTTTACGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATC
TTGCGATATATGTGTAGAAACTGCCGGAAATCGTCGTGTATTCACTCAGA
GCGATGAAAACGTTTCAGTTTGCTCATGAAAACGGTGTACAGGTGACACT
ATCCCATATCACCAGCTCACCGTCTTCATGCATACGAAATCGGATGACAT
CATCAGCGGCAGAATGGCATAAGGCGATAACTGTGCTTATTTTTCTTTAC
GCTAAGCCGTAATATATCCAGCTGAACGGCTTGTTATAGGTACGTT
UFO12030.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:52:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30016-RA | 446 | CG30016-RA | 22..360 | 85..423 | 1680 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:52:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10874978..10875284 | 423..117 | 1535 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:52:36 has no hits.
UFO12030.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:43 Download gff for
UFO12030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30016-RA | 17..365 | 80..430 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:05 Download gff for
UFO12030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30016-RA | 17..365 | 80..430 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:18 Download gff for
UFO12030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30016-RA | 17..365 | 80..430 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:18 Download gff for
UFO12030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10874978..10875283 | 118..423 | 100 | <- | Minus |
| 2R | 10875339..10875376 | 80..117 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:05 Download gff for
UFO12030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6762483..6762788 | 118..423 | 100 | <- | Minus |
| arm_2R | 6762844..6762881 | 80..117 | 92 | | Minus |
