UFO12032.5prime Sequence
1184 bp (1071 high quality bases) assembled on 2012-06-29
> UFO12032.5prime
TGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCG
TATAGCATACATTATACGAAGTTATCAGTCGACATGGCCCAGCAGGGTCA
GAGTGGAAGATCCCCAAGTGGTCCGCCCGGACCTCCTCCACCCCGTCCAC
CAAAAACGCCGCCGGGCGCATCGCCACGTGGAACGCCAACAGCAGACTCG
ACTCCGGGCGATGTGACTCCGGCTCGAGGACCTCCGCCACCGCCAGCGAC
CAAACGCGTTTCAATAGGAGTGGGTTCCACGCGTTCTGCCCCACCACCAG
CAACTGATCCAACCGGTCCGCCTCCAACTGCCGGAAAACCAGTGAGAGAC
ACCGGTCCATCGACATCGCCTAGGCCAAGTCTTCGGGATCCTGGCCAATC
GACTTCTGATAAGCCATCGACTTCTGATAAGCCATCGACTTCTGATAAGC
CATCGACATCTGCACGGACAACTGTTCGGGAGCCGGGTCCATCCTCATCT
CCCTCTCGTCCCGTTAGCACTCGTGAATCTGGGCGTATAACTTTCCAGGA
AGCAGCACCATCGACGTCTGCAAAAGTGGTCAAGCTAGCTGCATCTGAAC
CTCGACCCGCAAAGCCACCAGAAAAGGAGGGATTTAGCTTGTTTAAAAGG
AAGAAGAAATCCGTGGGCTCAAGTACGCCACCTTCACCATCACGTGGGCA
TAGGGCTCCTTCGATAATCGCGGCTTCAGCCCTGCAAAATAGGGCCAAAA
CCAATCGCATCCTTTACACAACCGATGAGGAGGTACGCGAAGCCCTCGTC
GAGTTCTCTGTGTTCATCATTTTTCTGATTCTAACATCACTGGTTGTTTT
GTCCGTTCGGCATACATATATGTTTTATTTCAATGACACGATGAAGAAAC
TATTTACGATCGGGAAATGGTAGTGGCTCCTTCGGTCACTGTTGGCTTTG
AAAGCTAATCACTGTGCCGGATTGTGGGACTATCTAAATATTACTTTCTT
GTACACTCCACGGCGATTTGACTTTTATGGACGACGCCAGCGATCTCCCG
TCATGCCACCTGAGTAGTGAGCAGTAGTGAGCAGTATGAGCAGGTATGAG
CATCACTGAAGAGTCTGGCGAGCCTGAAAGGCCAAATGACGATGCAAAGA
TTATTTATGCATCTTACTTGACTAGGCAGAGCTA
UFO12032.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:52:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pkd2-RA | 3271 | CG6504-RA | 110..1158 | 84..1112 | 4755 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:52:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12398383..12399142 | 84..843 | 3800 | 100 | Plus |
| 2L | 23513712 | 2L | 12399205..12399405 | 843..1038 | 740 | 97 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:52:41 has no hits.
UFO12032.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:44 Download gff for
UFO12032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pkd2-RA | 76..1097 | 76..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:08 Download gff for
UFO12032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pkd2-RA | 102..1123 | 76..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:21 Download gff for
UFO12032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pkd2-RA | 102..1123 | 76..1084 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:21 Download gff for
UFO12032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12398375..12399142 | 76..843 | 99 | -> | Plus |
| 2L | 12399206..12399405 | 844..1038 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:08 Download gff for
UFO12032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12398375..12399142 | 76..843 | 99 | -> | Plus |
| arm_2L | 12399206..12399405 | 844..1038 | 97 | == | Plus |
