UFO12033.5prime Sequence
1152 bp (1034 high quality bases) assembled on 2012-06-29
> UFO12033.5prime
GAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGT
ATAGCATACATTATACGAAGTTATCAGTCGACATGAGTAAGCTGGAAACG
GATTCGGACAGTTCAGAGGAGTTTTTCGATGCCGAGGACACTACGCCCAA
TCGCCATTCGACTTTGTGTCGAAAGCTGCCGCCCGAGGTGGCCCAGGAGT
TCATCTTTCCCGAGCCCGCCGTGAGAGTGAATGCCGCCGCCTCATCCGAC
AGCGATGCTACGCCCATTGGCGCTGGAACGCCCGCCACCCGGAGTCCCAC
TAATAGCCTGGGTGCCCGGCTAAAGCCGCAGGATGCAGGGGTCTTCGTTG
AGCCCAAGCCCGTGATAGGACCTTTGGGTAGACAGCGCTTTCACGAACTA
CGTCAGTGCATGCAAAACGATGAAGATGATAATCCAGGAAATACACTCAC
ACCTGATTCTCAGAATAGCTCAACGGATGGCATTTTTACCAACCGTTCGA
CGCATCCGTTTAAGGTCATTGAGACAGATGCGATGAGCATACAGAGCATG
ACATCACTGGGTCGCGTGGGCCGAATCTTGGCGGGCAGCATTGATCCATC
TGCTATAAGCATAGATCGCGAGTCCCTGGCCTCGTTGAATGCGCAACAGC
AGAAGCAGCAGGCGCAGCAGCAACAACAGGCGCAGCCTACATCGTCTACC
AGCTCCAATACTCCACCGAGCGTTGGAAACACCTCTTCCGGGATGAGCAC
GCCCAGGGTGTCGCCCAAGCATCAGCAGAGTGGTAAGGAAGTAGCCGCCA
CCACGACAGGGATTCCTAGTGCCGCATCCTCCGCGCAGAGCTCTGGTGTT
GGCTCGATGGTTTTGCAGGAACCAGATGTGATAGCAAGCACAAAGCTTGC
CCAGTCTAAAACTACTGATTCCATCACCTCGTCGGGACCCGTGGCGCCAC
GCGAAGAAAGAGAGTCTCGTAATTGCTCCATCAGTCTCAGATCAGTATAG
TCTTCCTCCTGCGACAACGAGACACTGATAGTGATACGCGTCTGTGAGAA
TGTGGCAGGTCTCAGCAAGCTGCGGATGACTTTGTCATGAATTCGAGAGC
TCTCTACATGCACCTAGTTCAGCCTCAATACCTGAACCTGTCTCTCACAA
AT
UFO12033.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:52:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34133-RC | 4263 | CG34133-RC | 340..1404 | 79..1126 | 4825 | 97.8 | Plus |
CG34133-RE | 4209 | CG34133-RE | 340..1404 | 79..1126 | 4825 | 97.8 | Plus |
CG34133-RB | 3831 | CG34133-RB | 635..1314 | 464..1126 | 2915 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:52:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29871445..29871890 | 602..1040 | 1935 | 98.2 | Plus |
3R | 32079331 | 3R | 29869849..29870054 | 168..373 | 1030 | 100 | Plus |
3R | 32079331 | 3R | 29871236..29871377 | 461..602 | 710 | 100 | Plus |
3R | 32079331 | 3R | 29871060..29871149 | 374..463 | 450 | 100 | Plus |
3R | 32079331 | 3R | 29869704..29869793 | 79..168 | 435 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:52:44 has no hits.
UFO12033.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:45 Download gff for
UFO12033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34133-RC | 331..1412 | 73..1140 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:10 Download gff for
UFO12033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34133-RE | 336..1417 | 73..1140 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:23 Download gff for
UFO12033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34133-RE | 336..1417 | 73..1140 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:23 Download gff for
UFO12033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29869700..29869793 | 73..168 | 96 | -> | Plus |
3R | 29869850..29870054 | 169..373 | 100 | -> | Plus |
3R | 29871060..29871149 | 374..463 | 100 | -> | Plus |
3R | 29871239..29871377 | 464..602 | 100 | -> | Plus |
3R | 29871446..29871999 | 603..1140 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:10 Download gff for
UFO12033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25695422..25695515 | 73..168 | 96 | -> | Plus |
arm_3R | 25695572..25695776 | 169..373 | 100 | -> | Plus |
arm_3R | 25696782..25696871 | 374..463 | 100 | -> | Plus |
arm_3R | 25696961..25697099 | 464..602 | 100 | -> | Plus |
arm_3R | 25697168..25697721 | 603..1140 | 95 | | Plus |