UFO12034.5prime Sequence
1140 bp (1045 high quality bases) assembled on 2012-06-29
> UFO12034.5prime
TGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCG
TATAGCATACATTATACGAAGTTATCAGTCGACATGTTTGGCGGCGCGAA
ACCCAGCTTCGGAGCCACTCCGGCGGCCACCAGCTTTGGCGGATTCAGCG
GCACCACAACAACCACTCCGTTTGGCCAGTCGGCATTTGGCAAACCCGCC
GCACCGGCCTTTGGAAACACCTCCACCTTTGCCGCCCAACCCGCGCAGCA
GTCACTGTTCGGTGCGGCAGCCACACCAGCTCAGCCCGCCGGAGGCTTAT
TCGGGGCAAACACGTCCACGGGATTTGGAAGCACTGCCACAGCTCAGCCC
ACGGCTTTTGGAGCCTTCTCGCAGCCGCAACAGACCTCGAACATATTTGG
ATCCACCCAGACGGCGGCAAGCACCTCCCTCTTTGGACAATCGACGCTAC
CCGCCTTTGGAGCCGCCAAGCCGACTATGACGGCCTTTGGGCAAACAGCT
GCTGCTCAGCCCACGGGCTCTTTGTTTGGCCAACCGGCTGCCGCCACCAG
TACAACAGGATTCGGAGGCTTTGGGACGTCGGCGCCTACAACCACCAATG
TTTTTGGCAGTGGCACCGCCTCCGCCTTTGCCCAACCTCAGGCTACGGCC
GTGGGAGCTTCCGGAGTCAATACGGGCACGGCCGTGGCCAAGTACCAGCC
AACCATTGGTACAGATACCCTGATGAAGAGCGGTCAGGCAAATAGTGTGA
ACACTAAGCAGCACTGCATCACGGCTATGAAGGAGTTCGAGGGCAAATCT
CTGGAGGAGCTCCGCCTGAAGACTATATGTGCGGGCGCAAGGGTCCACAG
GCTGGGAATGCTCCCGGGAGCTTTTGGATTTGGAGCTCAGTTACTCAGCC
CGCTCAGCTGCAGTGTGCCTGTTTGGAAGCACTGCCCAACCAAGCACAGT
CTGTTTGCCAAACTGTGACCGAGATAGAGCATTGTTTGGCACCACCGCTT
TGGCACAACCGGCGACTACCATTGCATCGGAGCAGCACCCAGCAAACAAC
TTTCTTGCAAAAGCCTTGGGCCACCAACACCCTCCGTTGCCGCTCCCAAC
TGACCCTCCAATCATTGGGGCCAAGCCTGCTTGACAGAAG
UFO12034.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:52:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup98-96-RD | 6412 | CG10198-RD | 246..1317 | 84..1132 | 4575 | 96.7 | Plus |
| Nup98-96-RC | 3987 | CG10198-RC | 246..1317 | 84..1132 | 4575 | 96.7 | Plus |
| Nup98-96-RA | 6624 | CG10198-RA | 458..1529 | 84..1132 | 4575 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:52:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23780110..23780831 | 1065..357 | 2720 | 95.6 | Minus |
| 3R | 32079331 | 3R | 23780885..23781164 | 363..84 | 1400 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:52:15 has no hits.
UFO12034.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:39 Download gff for
UFO12034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup98-RC | 475..1466 | 77..1055 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:52 Download gff for
UFO12034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup98-96-RA | 452..1443 | 77..1055 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:08 Download gff for
UFO12034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup98-96-RA | 452..1443 | 77..1055 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:08 Download gff for
UFO12034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23780119..23780824 | 364..1055 | 97 | <- | Minus |
| 3R | 23780885..23781175 | 72..363 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:52 Download gff for
UFO12034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19605841..19606546 | 364..1055 | 97 | <- | Minus |
| arm_3R | 19606607..19606897 | 72..363 | 97 | <- | Minus |
