UFO12035.5prime Sequence
1164 bp (1065 high quality bases) assembled on 2012-06-29
> UFO12035.5prime
ATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTAT
AGCATACATTATACGAAGTTATCAGTCGACATGCTTGCGTTGTTGGCAAG
CGGATCGAGCAGAAGCAGCAGCAACAACAAACTGGCCGAATCGGAAAACT
CAGCGCAAAACTCCAACAACATGAGTTGGGGCACCGAGCTATGGGATCAA
AACGAGAATCTGGCGATACACACAAACAGAGGCATCGATGCTCTGGACAA
GTTTGCCAACTTCTTACGCGATCGAGTGGCCATAGAAACGGAATATGCCG
GCAAATTAAGGCGCCTAGTGAAAAACTACCAGCCCAAAAAGAAGGAGGAG
GAAGACAATGAATTCACATCGGTGCAAGCGTTCCGCAATCTGCTCAAGGA
GGTGGGCGATCTGGCGGGACAGCGCGAGGTGGTGTCCGAGTCCCTGCAGC
TGCAGATCATTGCGGGAGTGACGCTTCTGTCCAAGACATTGCGCGAGGAA
CGCAAGAAATGCCTTAGCGATGGTGCCACCCTGCAGCAGAACCTCACCAC
ACAGCTCTCCTCGCTGGACCGGGCCAAGCGGAACTACGAGAAGGCCTACC
GTGACTCGGAGAAGGCGGTGGACAGCTATAAGCGGGCAGACATGGACCTC
AATCTCAGCCGGGCCGAGGTGGAGCGCTACAAGAACGTGATGACGTCCAA
GATCCAGCAGTCGGACGATGCGAAGAACGAGTACGCTAACCAGCTACAGA
AGACGAACAATCTGCAGCAGCAACACTACAGCATGCTGCTGCCCTCGGTC
CTCAATCGGCTGCAGGAGCTGGACGAGAAACGCACCCGTGGCTTCAGGGA
GTTCATTGTGGGAGCGGCGGATGTGGAGTCATCGGTGGCGCCAATCATAG
CCCGCTGCATGGAGGGTATCGTGAAGGCCGGCGAGTCCATCAACGAAAAG
GAGATACCTTCAAAGTCATAGAAAGATATCAATCTGGTTTCACGCACAAG
GAAATACCCTTCGAGGATCTGTCAAGTGCGATCGGATTCGTGCAGACTCA
CACTACAGCCACTCGACATCGAACACTGACATTGAGCACGATGATGCAAC
AAGCTGAAGAACGCGTGGGTCATTTTAACATATTCCGCAGCAATAAAAAT
TCCTGGACTGCGAA
UFO12035.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:52:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cip4-RC | 2468 | CG15015-RC | 103..1200 | 81..1162 | 4955 | 97.8 | Plus |
| Cip4-RG | 3507 | CG15015-RG | 103..1200 | 81..1162 | 4955 | 97.8 | Plus |
| Cip4-RK | 3504 | CG15015-RK | 103..1200 | 81..1162 | 4955 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:52:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4327233..4327704 | 975..505 | 2310 | 99.8 | Minus |
| 3L | 28110227 | 3L | 4327773..4327917 | 506..362 | 725 | 100 | Minus |
| 3L | 28110227 | 3L | 4338066..4338183 | 311..194 | 590 | 100 | Minus |
| 3L | 28110227 | 3L | 4363026..4363127 | 195..94 | 510 | 100 | Minus |
| 3L | 28110227 | 3L | 4336269..4336321 | 361..309 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:52:19 has no hits.
UFO12035.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:39 Download gff for
UFO12035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cip4-RA | 121..1220 | 81..1164 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:55 Download gff for
UFO12035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cip4-RK | 103..1202 | 81..1164 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:09 Download gff for
UFO12035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cip4-RK | 103..1202 | 81..1164 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:09 Download gff for
UFO12035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4327233..4327702 | 507..975 | 99 | <- | Minus |
| 3L | 4327773..4327917 | 362..506 | 100 | <- | Minus |
| 3L | 4336269..4336319 | 311..361 | 100 | <- | Minus |
| 3L | 4338067..4338182 | 195..310 | 100 | <- | Minus |
| 3L | 4363027..4363127 | 94..194 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:55 Download gff for
UFO12035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4327773..4327917 | 362..506 | 100 | <- | Minus |
| arm_3L | 4336269..4336319 | 311..361 | 100 | <- | Minus |
| arm_3L | 4338067..4338182 | 195..310 | 100 | <- | Minus |
| arm_3L | 4327233..4327702 | 507..975 | 99 | <- | Minus |
| arm_3L | 4363027..4363127 | 94..194 | 100 | <- | Minus |
