UFO12036.5prime Sequence
1125 bp (1028 high quality bases) assembled on 2012-06-29
> UFO12036.5prime
AACTCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAA
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGATGCTAAC
AAAGCGGCAGAAACGGCAGCCAAAGAAAATGCCGCCGATAAGGTAAGCGA
TGTGGAAAATGCATCGGTTACTGCGGGGGTGGCGAAAGCCGTGGGGGCAC
AGCCGGAAAGGGGCTCCAAAGATGCAGCCGAATCCCCCGCCGCTGTCGAC
GCCTCTGCCTCTGCCGCCACTGATGACGTCGCTGATAAAAAAGCCAAAGG
AGACTCAACGGCTGTTTCAAATACCGAATCGGATGCAGCTGCAGCGGACA
AAAAGGAGAAATCCCCCTCGCCGGTAATAAAGAAGTCCAACAATAAGGAT
GCTAAAAAGGAGGACAACTCCGAAAAGGACGAGGAGAACTCGGAAGACGG
CGATGAGCCAGAAGATGAGGCTGATGAGAAAGCTAGCGATGAAGAGAGCG
AGAAGAAGAAACCGAAATTAGATGCAGAGGACAAGATAAAGGATGCCACT
GATGAGTCCAAGCCAAAATCGGGAGCCGATAAGCCCAAGAAACCTGAGCC
CAAGGCCAAGAATGGCAAGGTGGCTAAGGAGGAGGACGACGACGAAGAGG
ACGAGGATGATGAGGATGCCGAAGATGACGATGGAGACGAGAACGATGGC
CTGGACAAGAACAACGAGGTGGCCGAGGATGATGAGAATGTCGTCGCTCT
CGCCGAGATTGATCGCATTAATGAGAATATCAACAAGACTCGTGTAGATG
GTCTGCAAACATTGCATGCAATCTGCTTTGGCGCCCAAGGCAAGAACAAT
GTGGTCAAGAAGAACTTGCGATCCTTTGCCGGTTTCGAGTTTGCCAAGGA
TTCAGCGGAGTACAACAAAAAGCTGGAGGCCATCAAAAGGGGATATATGG
CCCTGCGCAGCATCTGCGAGATCCTTACCTCGATCGCAGGCAGCAGACGA
GACTGTCCTTTCGAGTGCTCAATCCTATGACGACGAGTCGCTTTGCTTGA
GCAAGTGATGAAGAAGAGAGGAGATGCGAGACAGGATCTGATGAGAATGA
CGAGACCTCATGAAAGGACAGGAGC
UFO12036.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:52:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dek-RE | 3947 | CG5935-RE | 82..1119 | 89..1104 | 4515 | 96.9 | Plus |
| Dek-RD | 1920 | CG5935-RD | 82..1119 | 89..1104 | 4515 | 96.9 | Plus |
| Dek-RA | 2567 | CG5935-RA | 82..1119 | 89..1104 | 4515 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:52:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16857631..16858114 | 337..820 | 2420 | 100 | Plus |
| 2R | 25286936 | 2R | 16856805..16857052 | 91..338 | 1240 | 100 | Plus |
| 2R | 25286936 | 2R | 16858181..16858342 | 821..979 | 650 | 96.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:52:23 has no hits.
UFO12036.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:40 Download gff for
UFO12036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dek-RD | 75..1076 | 82..1068 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:57 Download gff for
UFO12036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dek-RA | 76..1077 | 82..1068 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:11 Download gff for
UFO12036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dek-RA | 76..1077 | 82..1068 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:11 Download gff for
UFO12036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16858181..16858444 | 821..1068 | 91 | | Plus |
| 2R | 16857633..16858114 | 339..820 | 100 | -> | Plus |
| 2R | 16856797..16857052 | 81..338 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:57 Download gff for
UFO12036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12744302..12744557 | 81..338 | 98 | -> | Plus |
| arm_2R | 12745138..12745619 | 339..820 | 100 | -> | Plus |
| arm_2R | 12745686..12745949 | 821..1068 | 91 | | Plus |
