UFO12037.5prime Sequence
422 bp (354 high quality bases) assembled on 2012-06-29
> UFO12037.5prime
AATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTA
TAGCATACATTATACGAAGTTATCAGTCGACATGTCCGAAGAAATGGAAA
TTACTCCTATTACCGGAATGGATGAAGTGTCCGAAAAAACTGCGGAGAAA
GTCTTTGCTCCAATGTTCGAAGCAGAAATGTCCGAGAAAATGGATATAAC
TCCTGTTACCGGAATGGATGAAGTGTCCGAAAAATCTGCGGAGAAAGTCT
TTGCTCCAATGTTCGAAGCAGAAATGTCCGAGGAAATGGAAATAACTCCC
TGTTACCGGAATGGATGAAGTGTCCCGAAATTATGGAGGAGAAGGGCATC
GCGCCAATATTCAAAGCACATATGTCCGAGATACGGAAAATACTCCTGTT
ACGGGAAGGGGAAAAGTGGTCT
UFO12037.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:52:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14190-RA | 2489 | CG14190-RA | 111..446 | 82..418 | 1540 | 97.6 | Plus |
| CG14190-RA | 2489 | CG14190-RA | 207..481 | 82..358 | 840 | 87.4 | Plus |
| CG14190-RA | 2489 | CG14190-RA | 102..339 | 170..407 | 695 | 87.1 | Plus |
| CG14190-RA | 2489 | CG14190-RA | 303..483 | 82..262 | 380 | 80.7 | Plus |
| CG14190-RA | 2489 | CG14190-RA | 102..243 | 266..407 | 275 | 81.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:52:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19065414..19065749 | 82..418 | 1465 | 97.6 | Plus |
| X | 23542271 | X | 19065510..19065784 | 82..358 | 790 | 87.4 | Plus |
| X | 23542271 | X | 19065412..19065642 | 176..407 | 610 | 87.1 | Plus |
| X | 23542271 | X | 19065606..19065786 | 82..262 | 380 | 80.7 | Plus |
| X | 23542271 | X | 19065412..19065519 | 272..381 | 195 | 82.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:52:56 has no hits.
UFO12037.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:48 Download gff for
UFO12037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14190-RA | 1..339 | 82..422 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:17 Download gff for
UFO12037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14190-RA | 105..449 | 74..422 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:29 Download gff for
UFO12037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14190-RA | 105..449 | 74..422 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:29 Download gff for
UFO12037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19065408..19065752 | 74..422 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:17 Download gff for
UFO12037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18959441..18959785 | 74..422 | 96 | | Plus |
