UFO12038.5prime Sequence
452 bp (350 high quality bases) assembled on 2012-06-29
> UFO12038.5prime
ATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTAT
AGCATACATTATACGAAGTTATCAGTCGACATGGCGGAAGTGAAGCGTCG
GGACCCAAACCGCCCGCCCGGACACTACTTGTGCGGCATGGCCAACTGGC
ATCCGCCCTGGCTGCAGAAGTACGCCACCACCAAGATGTTCATGGGCGTC
TACGGGCTGCTCGGCACCATTCAGGCGATGTCCTACATGTACTTCATCGT
CACTCTAACCACGCTGAAAAGCGCTTCAAGATTCCCAGCCAACGACAGGC
ATAATTCTAAGCGGCAATGAAATCTCGCAGATCATGCTCTCGCTATCCTC
TCCTACATCGGTGGTCAGCGGAATCGTCCCCGGTGATGCCTGGGGCATTG
TCTCTGCGGCCTGTCCTGCTACTACTCGTCCTGCTCATTCATCTACGAGC
TG
UFO12038.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:53:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oatp33Ea-RB | 3025 | CG5427-RB | 400..781 | 81..452 | 1645 | 97.1 | Plus |
| Oatp33Ea-RA | 2939 | CG5427-RA | 388..769 | 81..452 | 1645 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:52:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12444176..12444388 | 292..81 | 1015 | 99.5 | Minus |
| 2L | 23513712 | 2L | 12443915..12444057 | 434..297 | 470 | 95.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:53:00 has no hits.
UFO12038.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:48 Download gff for
UFO12038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oatp33Ea-RA | 380..767 | 76..452 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:19 Download gff for
UFO12038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oatp33Ea-RA | 382..769 | 76..452 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:32 Download gff for
UFO12038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oatp33Ea-RA | 382..769 | 76..452 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:32 Download gff for
UFO12038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12444169..12444394 | 76..298 | 98 | | Minus |
| 2L | 12443894..12444055 | 299..452 | 94 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:19 Download gff for
UFO12038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12443894..12444055 | 299..452 | 94 | <- | Minus |
| arm_2L | 12444169..12444394 | 76..298 | 98 | | Minus |
