UFO12039.5prime Sequence
828 bp (591 high quality bases) assembled on 2012-06-29
> UFO12039.5prime
TAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTATA
GCATACATTATACGAAGTTATCAGTCGACATGCATGCATCCTCCGCGGCG
GCCACTGCACTTGTGGAGTACTCGGACGTCAGCTCAGAGGACTTCTCGGA
TCAGGAGGCAGGGGACTTGGATGCGGACGCCGGCAAGGGTGCCGGAAACA
TCAAAAAACCGAAGCCAGCTCCGGATAATCAGTTCTCCAAAGGTCGTCTT
GATGCCAAGCCCGATAAAGAGGGTTATGATAACTACAGAAGTAGAAGGGC
GGAAGACTCAAGCGACCCAGTGGCGGCCGGATCGAGGCAAACGTCTAGCA
GCGAGGCCACGAATCCGCGGGAGGAACCTTCGCAGGCATCCAACACCTCG
AAGGACGAGCTGTGGGGCATAGAGATATACATGTCCAGCGATTCTATCGA
CACCGATGATCTGGAGGCGGAAATGAAGCGGCAAAAGCGCAAAAAGCAGA
AAAAGGAAAAACACAAACACAAGTCGAAAAAAAAAGTCCAAGAAGCGCAA
GAAGAAGCGGGCCAAGTCATACTCCAGCATCGATTCGATGTCAGACAATG
ACATCAATGCCTTACTGGACCGGCGCTATACTCCGCCGACGGCTCCTAGC
AAGAGCAACGAACGGACAGTTAGCGCTGCGCCGTCCTCCTTCACCCCACA
CATCTCAAGGATAGCAGTTTGTCAGCCACTCAACCGCCCGTGCGTTCGCC
GAATACCAACAGCAGCTACTACGGCGAGTCGTTCCTGGAGACGCCAACTC
TGCACTGGGAGCAACCTGCATGTTCACA
UFO12039.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:53:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdk12-RC | 4244 | CG7597-RC | 396..1138 | 80..820 | 3365 | 97.3 | Plus |
| Cdk12-RA | 4772 | CG7597-RA | 396..1138 | 80..820 | 3365 | 97.3 | Plus |
| Cdk12-RB | 4530 | CG7597-RB | 682..1424 | 80..820 | 3365 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:53:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21517843..21518379 | 286..820 | 2235 | 96.1 | Plus |
| 3L | 28110227 | 3L | 21517582..21517790 | 80..288 | 1045 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:53:03 has no hits.
UFO12039.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:49 Download gff for
UFO12039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7597-RA | 395..1143 | 80..827 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:22 Download gff for
UFO12039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk12-RB | 682..1430 | 80..827 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:33 Download gff for
UFO12039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk12-RB | 682..1430 | 80..827 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:33 Download gff for
UFO12039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21517582..21517790 | 80..288 | 100 | -> | Plus |
| 3L | 21517846..21518385 | 289..827 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:22 Download gff for
UFO12039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21510682..21510890 | 80..288 | 100 | -> | Plus |
| arm_3L | 21510946..21511485 | 289..827 | 95 | | Plus |
