UFO12040.5prime Sequence
1133 bp (1036 high quality bases) assembled on 2012-06-29
> UFO12040.5prime
AATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTCGTA
TAGCATACATTATACGAAGTTATCAGTCGACATGTGGTTGATTGCCTGCC
TGTTTATTGTTCCTATTTGCGCTGCTCCAACAACCCAGAATGTCGAGGCG
GATCCCAATTCACGGCTAATGAACAACATCCTCAGCTACGTGGCGGAGGA
TTCCAGTGCGTGCGGCACCTACTTTCAATATGCCTGCGGCAAGTACGCAG
TACGTCACCGCGACGATCCCTTCACGGAGATCATCCAGATGCTGGACCAC
AAGGTGAACGGAAACCTAGTCCAACTGATGCACGAGCTGCACCAGCGCTC
CCAGTCACCCGGCTTCAACGAGTCCAGTGTGGAGGCCAAGGTCTTGCACT
TCTACCGCACCTGCCGTGAAGCTCCGCCGAGTACACGCAAGATGGAGCAC
TACCTTAGACTAGCCCCTCCTGGCCAGGCACTTACATGGCCCCAGTTTAT
GCCCCGCGGCGAGCCATGGCCAAAGGCTCAATTCAAGTGGATGAAGTCCT
TGGGACACCTATACCGCTATGGGTTTACCAATGTTTTGGTGAACGTGTTG
GTCTTACGGAGCTCTGAGAACAGTAACCGCTTCCGACTGGACATCAGTAT
GCCTAGTCTCGAAGGGGACGCGCAGCACCTGGGGCGGTTTTCTAAGTACC
CTCGCCACTCTCCAGATCATTGGTGTGCCGACGAAAAGCATATTACCCCT
TGTGCGGAAGATCAGAACGCTAGAGTCCGCCATACGCGTCCTAACCGAAG
TGGACGACGATGATGAAAGCGAGACTTGGACTTTGCGCCAGTGGGAGTAC
AAAACCGGCTACGCATGGCAGGTTTCGTCGAGTCAATAGTTGGCCATAGT
GTCTCACATCACTACGTGATGCAGCGCAGAATGCAAAGTACTTCACGGGC
CTTAAGCGCTGATGACTCCCACGGACGCCGAGTGTTGACCAACTACATCA
TGACCCGATTCGTGCTCTACTCATAGACGACTTTATGACCAGCATGAGCA
CATTGATTGCGTCACGGAATATGCGTCGCAACATGATTCTGCATCGACTG
CTCTACAGGAGACGCTTCCTGAACTCTGCGCAC
UFO12040.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:53:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42370-RA | 2078 | CG9508-RA | 1..1056 | 82..1130 | 4785 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:53:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6384457..6385512 | 1130..82 | 4505 | 97.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:53:06 has no hits.
UFO12040.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:50 Download gff for
UFO12040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42370-RA | 1..1058 | 82..1133 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:24 Download gff for
UFO12040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42370-RA | 1..1058 | 82..1133 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:34 Download gff for
UFO12040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42370-RA | 1..1058 | 82..1133 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:34 Download gff for
UFO12040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6384453..6385518 | 73..1133 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:24 Download gff for
UFO12040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6384453..6385518 | 73..1133 | 97 | | Minus |
