UFO12041.5prime Sequence
1106 bp (921 high quality bases) assembled on 2012-06-29
> UFO12041.5prime
CTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTC
GTATAGCATACATTATACGAAGTTATCAGTCGACATGGATCTAGCAGATC
AAATCGATGACTATATTTGTTCGTTCGAGGGACTTGGTGACTTAACAATG
GACTCCCTGGCCATCTTCATTTTCCTGTGGGCCGTTCTGGCCCTCTTCTC
CGTGTGGCTAATCAAGCTGCTCTACCACAAGTATCTCAACAAGGACAAGT
CGGCCAGTGCGGCCAACAGTCGCCAGACGAGCGTGGCCCCCACATCCGGA
TCACCCACGTCCGTCGCCGGCAAGACGGAGAAACGTCTCTCGGAGCCGCG
CGATCTTCTGGCCACCAAGAGCAAGGTGGAAGGCTTGGACTTATCCAAGC
CTCTGGCCGGCGCATCCGGTGGTCGAGGACGTTCATCAGCATCGCCATTG
AATACCGCTGGTGCAGCTGCCGGCGGTCCACGTCGTCGGGTGGTGCGTCA
GAGTTCCACTGGGCCAGAGAATCGCAAGAAGCGCTATGTCCCACCGCCAT
CAAATGTCGTGGGTCCAGAAACGAGCTCCGTCACCTGGACCAACCAAGTG
TTTCGCTGGCTTTATAGCGACCTGGTCATCGTCAACGAGCTGCTCATGTC
CTGGGTAATCGCCATCAACGACACGCTGCGCAAGTCCGTGGAGGAGCATG
GAGTGGCCGTTGAAGTGGTTCGAGTGCTACCCGACAGTCCTGCCCCCGGA
TTGAATAATATATTTTGTAATTGCGATGAGAACAATCCCGCTGATATGCT
CATCACCTTTGACTGCGATGCATGCCGGTGCTGCAGGTGAAGACCTTCCG
CCAAAGTCAGGCAATGTGGAGACCTCCCACTACCACGTCACTGTGTCTAG
AGCTCCCGCGCCCGTATGGACAGTCCCATGAACTACAACAGCCCTCAAGG
GTGAGATGCGAGTCTAGGGCTATCCGGATGTTCGCATCACGATGACAGCG
TGGGTCCCTTCACGCGATGTATCAGGATGAATAGCATTGCTCACGATGAT
ATGAACATCTTGAGACCGCTTGCGCGACACGTCCATGCGGGGGGAACATC
TCATTA
UFO12041.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:53:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10737-RN | 3107 | CG10737-RN | 240..1240 | 85..1080 | 4250 | 95.6 | Plus |
| CG10737-RO | 3430 | CG10737-RO | 240..1240 | 85..1080 | 4250 | 95.6 | Plus |
| CG10737-RS | 3953 | CG10737-RS | 985..1985 | 85..1080 | 4250 | 95.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:53:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19170673..19171161 | 85..573 | 2370 | 99 | Plus |
| 2R | 25286936 | 2R | 19171252..19171375 | 573..696 | 590 | 98.4 | Plus |
| 2R | 25286936 | 2R | 19172344..19172526 | 798..981 | 550 | 91.4 | Plus |
| 2R | 25286936 | 2R | 19172177..19172280 | 695..798 | 505 | 99 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:53:09 has no hits.
UFO12041.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:50 Download gff for
UFO12041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10737-RA | 450..1377 | 85..1012 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:27 Download gff for
UFO12041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10737-RS | 985..1912 | 85..1012 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:36 Download gff for
UFO12041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10737-RS | 985..1912 | 85..1012 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:36 Download gff for
UFO12041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19170673..19171161 | 85..573 | 98 | -> | Plus |
| 2R | 19171253..19171375 | 574..696 | 98 | -> | Plus |
| 2R | 19172179..19172280 | 697..798 | 99 | -> | Plus |
| 2R | 19172345..19172526 | 799..981 | 91 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:27 Download gff for
UFO12041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15059850..15060031 | 799..981 | 91 | == | Plus |
| arm_2R | 15058178..15058666 | 85..573 | 98 | -> | Plus |
| arm_2R | 15058758..15058880 | 574..696 | 98 | -> | Plus |
| arm_2R | 15059684..15059785 | 697..798 | 99 | -> | Plus |
