UFO12042.5prime Sequence
1184 bp (1087 high quality bases) assembled on 2012-06-29
> UFO12042.5prime
CTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTC
GTATAGCATACATTATACGAAGTTATCAGTCGACATGGATAGCGAGATAC
AAGGATTCTTTAAGAACAAGACCGTGTTCCTTACGGGTGGCACCGGATTT
CTGGGAAAAGTGATCATTGAGAAACTACTGAGGACCACGGAAGTCAATCG
GATTTACTCCTTAATTAGACCTAAGCGGGGAGTGCCTATCGAGGACCGAA
TCACAACCTGGGCAAAGGATCCGGTGTTTGAGGTGCTCCTAAGGACGAAG
CCAGATGCCTTGCAGCGAGTTTGTCCCATCGCGGGCGACTGCTTGGATCC
GGATCTGGGTATAAGCCAATCGGATCAAAGGATCCTGACCGCCGAGGTGC
AGATTGTAATCCATGGAGCTGCAACCGTGCGATTCGACGAGGCTTTACAC
ATCTCCTTGGCCATCAATGTACGAGCCACTCGTCTGATGCTTCAACTGGC
CAAGCAGATGACCCAGCTGGTGTCCTTCGTTCACGTATCCACTGCCTACT
CCAACTGCGTGGTGCATGACATCGCAGAGCGATTCTATCCGGAGCACTTG
AACTGCAGTTCGGATAAGATCCTAGCCGTGGGTGAACTGGTAAGCAATAA
ATTACTGGACGCGATGGAACCTAGCCTTGTTGGCTCCTTCCCCAACACGT
ACACCTACACCAAAGCCCTGGCCGAGGATGTGATCCTGCGGGAGGCGGGC
AACCTGCCACTGTCCATCTTCCGACCGGCGATCATAATGTCCACTTACAA
GGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACCACTGGCCCTCT
GCTTCGGCGGAGCTCGCGGTATAATGCGGGTCACCACGGTGGACCCTTCA
GCCAAGATCAGCCTAGTTCCCGCTGACTACTGCGTAAATGTGCATTGGCT
TGCGCTTGAGACGGCGGAGATATCCGTACAGAATGAAAGGTCACGACGCC
CCCCATTTACGCGTTTGCACCTAGCGAGAATACCTGATGAGCTACGAAAC
TTTATTCAATCATCTATTATCTATCGGACATCATACCGCTTACCAAGATG
CTGTGTTTCCGTTCGTCTGTGCACCTCCACACAATTCCTAGTCCGCTGAC
GCCATCTTCTTACACTTCGGCTACACATTCTCGA
UFO12042.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:53:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17560-RA | 1712 | CG17560-RA | 32..1123 | 85..1165 | 4990 | 97.9 | Plus |
CG17562-RA | 1674 | CG17562-RA | 101..795 | 85..779 | 745 | 74.4 | Plus |
CG10097-RC | 4716 | CG10097-RC | 3294..3525 | 394..625 | 305 | 75.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:53:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16618276..16618787 | 273..784 | 2560 | 100 | Plus |
3R | 32079331 | 3R | 16618843..16619170 | 785..1105 | 1250 | 96.3 | Plus |
3R | 32079331 | 3R | 16618105..16618222 | 159..276 | 590 | 100 | Plus |
3R | 32079331 | 3R | 16615697..16616159 | 317..779 | 575 | 74.9 | Plus |
3R | 32079331 | 3R | 16617981..16618056 | 85..160 | 380 | 100 | Plus |
3R | 32079331 | 3R | 12392007..12392238 | 625..394 | 305 | 75.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:53:12 has no hits.
UFO12042.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:51 Download gff for
UFO12042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17560-RA | 32..1086 | 85..1130 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:28 Download gff for
UFO12042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17560-RA | 32..1086 | 85..1130 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:37 Download gff for
UFO12042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17560-RA | 32..1086 | 85..1130 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:37 Download gff for
UFO12042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16617981..16618056 | 85..160 | 100 | -> | Plus |
3R | 16618107..16618219 | 161..273 | 100 | -> | Plus |
3R | 16618277..16618787 | 274..784 | 100 | -> | Plus |
3R | 16618843..16619197 | 785..1130 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:28 Download gff for
UFO12042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12443703..12443778 | 85..160 | 100 | -> | Plus |
arm_3R | 12443829..12443941 | 161..273 | 100 | -> | Plus |
arm_3R | 12443999..12444509 | 274..784 | 100 | -> | Plus |
arm_3R | 12444565..12444919 | 785..1130 | 95 | | Plus |