Clone UFO12042 Report

Search the DGRC for UFO12042

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:120
Well:42
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG17560-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO12042.5prime Sequence

1184 bp (1087 high quality bases) assembled on 2012-06-29

> UFO12042.5prime
CTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTTC
GTATAGCATACATTATACGAAGTTATCAGTCGACATGGATAGCGAGATAC
AAGGATTCTTTAAGAACAAGACCGTGTTCCTTACGGGTGGCACCGGATTT
CTGGGAAAAGTGATCATTGAGAAACTACTGAGGACCACGGAAGTCAATCG
GATTTACTCCTTAATTAGACCTAAGCGGGGAGTGCCTATCGAGGACCGAA
TCACAACCTGGGCAAAGGATCCGGTGTTTGAGGTGCTCCTAAGGACGAAG
CCAGATGCCTTGCAGCGAGTTTGTCCCATCGCGGGCGACTGCTTGGATCC
GGATCTGGGTATAAGCCAATCGGATCAAAGGATCCTGACCGCCGAGGTGC
AGATTGTAATCCATGGAGCTGCAACCGTGCGATTCGACGAGGCTTTACAC
ATCTCCTTGGCCATCAATGTACGAGCCACTCGTCTGATGCTTCAACTGGC
CAAGCAGATGACCCAGCTGGTGTCCTTCGTTCACGTATCCACTGCCTACT
CCAACTGCGTGGTGCATGACATCGCAGAGCGATTCTATCCGGAGCACTTG
AACTGCAGTTCGGATAAGATCCTAGCCGTGGGTGAACTGGTAAGCAATAA
ATTACTGGACGCGATGGAACCTAGCCTTGTTGGCTCCTTCCCCAACACGT
ACACCTACACCAAAGCCCTGGCCGAGGATGTGATCCTGCGGGAGGCGGGC
AACCTGCCACTGTCCATCTTCCGACCGGCGATCATAATGTCCACTTACAA
GGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACCACTGGCCCTCT
GCTTCGGCGGAGCTCGCGGTATAATGCGGGTCACCACGGTGGACCCTTCA
GCCAAGATCAGCCTAGTTCCCGCTGACTACTGCGTAAATGTGCATTGGCT
TGCGCTTGAGACGGCGGAGATATCCGTACAGAATGAAAGGTCACGACGCC
CCCCATTTACGCGTTTGCACCTAGCGAGAATACCTGATGAGCTACGAAAC
TTTATTCAATCATCTATTATCTATCGGACATCATACCGCTTACCAAGATG
CTGTGTTTCCGTTCGTCTGTGCACCTCCACACAATTCCTAGTCCGCTGAC
GCCATCTTCTTACACTTCGGCTACACATTCTCGA

UFO12042.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:53:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG17560-RA 1712 CG17560-RA 32..1123 85..1165 4990 97.9 Plus
CG17562-RA 1674 CG17562-RA 101..795 85..779 745 74.4 Plus
CG10097-RC 4716 CG10097-RC 3294..3525 394..625 305 75.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:53:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16618276..16618787 273..784 2560 100 Plus
3R 32079331 3R 16618843..16619170 785..1105 1250 96.3 Plus
3R 32079331 3R 16618105..16618222 159..276 590 100 Plus
3R 32079331 3R 16615697..16616159 317..779 575 74.9 Plus
3R 32079331 3R 16617981..16618056 85..160 380 100 Plus
3R 32079331 3R 12392007..12392238 625..394 305 75.4 Minus
Blast to na_te.dros performed on 2014-11-28 17:53:12 has no hits.

UFO12042.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:51 Download gff for UFO12042.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17560-RA 32..1086 85..1130 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:28 Download gff for UFO12042.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17560-RA 32..1086 85..1130 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:37 Download gff for UFO12042.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17560-RA 32..1086 85..1130 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:37 Download gff for UFO12042.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16617981..16618056 85..160 100 -> Plus
3R 16618107..16618219 161..273 100 -> Plus
3R 16618277..16618787 274..784 100 -> Plus
3R 16618843..16619197 785..1130 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:28 Download gff for UFO12042.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12443703..12443778 85..160 100 -> Plus
arm_3R 12443829..12443941 161..273 100 -> Plus
arm_3R 12443999..12444509 274..784 100 -> Plus
arm_3R 12444565..12444919 785..1130 95   Plus