UFO12043.5prime Sequence
976 bp (950 high quality bases) assembled on 2012-06-29
> UFO12043.5prime
TCTGAATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAACTT
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCCTGTTGCGGC
CAAATCACCAGTATACGAGTGCCCATCGAGCTAAGCAATCAGAGCGATGT
GCTCAAGGGTCCAGAACAAATACACGTCTCCAAGTTCTACAAGGAGTCGA
AGAACGGCAAGTTCGTGTCCTACATCACAGAGAATGTCCGCACCCTGTAC
CAGACGTTCCGCGAGGGCGCCTACGCCTCCAACAATGGACCATGTCTTGG
CTGGCGCGAGACCCTGACCTCCCCCTACCAGTGGATCAACTACGACGAGG
CCCTGCTGCGTGCCAAGAACTTTGGAGCCGGAATGCTGGCGCTAGGAGCC
AGGCCAAAGCAGTTGATTGGGATCTACTCGCAGAACCGCCCGGAATGGAT
CCTGTACGAGCAGGGCTGCTACTCCTTCTCCTTGGTGGTGGTGCCGCTGT
ACGACACCCTGGGCCCCGATGCCTGCGCCTTCATCATACGCCAGACGGAT
ATGCAGGTGGTGATTGTGGAGGACGATGGCAAGGCGGCCATGCTGTTGGA
GAAGGCGCCGCGCAGTCTGAAGATCATAGTGGCTATCAAGCCCATCCGGC
AGACGACCCTGGAGCGGGCACGCAGCCGAGGCATACAGATATTCTCATTT
ATCGATGTGGAGAAACTAGGTGCCAAAGGCAACCATCCGGAGGTGCCGCC
GACGGCGGAGGATCTTTGCACGGTGTGCTACACGTCCGGGACGACGGGCA
TCCGAATGGCGTGATGCTCACCCACGGCAACGTGGTGGTCCGGCGTCTGT
TCTGTGATCCTGCAGATGGGCGACCATCGCATCCGGGCGGGCGATGTGAT
GGTGTCATTCCTGCCCTGGACCACATGTTCGAGCGTTGGCTGGAGGATGG
AAAGTACTATGTGGGGCGGCTGTGTG
UFO12043.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:53:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3961-RD | 2649 | CG3961-RD | 250..1141 | 85..976 | 4265 | 98.9 | Plus |
| CG3961-RC | 3309 | CG3961-RC | 578..1398 | 156..976 | 3910 | 98.8 | Plus |
| CG3961-RA | 3373 | CG3961-RA | 642..1462 | 156..976 | 3910 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:53:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18880335..18880981 | 976..330 | 2925 | 98.2 | Minus |
| 3L | 28110227 | 3L | 18881078..18881253 | 331..156 | 880 | 100 | Minus |
| 3L | 28110227 | 3L | 18882318..18882391 | 158..85 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:53:15 has no hits.
UFO12043.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-29 09:35:52 Download gff for
UFO12043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3961-RD | 250..1141 | 85..976 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:30 Download gff for
UFO12043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3961-RD | 250..1141 | 85..976 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:38 Download gff for
UFO12043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3961-RD | 250..1141 | 85..976 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:38 Download gff for
UFO12043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18880335..18880979 | 332..976 | 98 | <- | Minus |
| 3L | 18881078..18881251 | 158..331 | 100 | <- | Minus |
| 3L | 18882319..18882391 | 85..157 | 100 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:30 Download gff for
UFO12043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18873435..18874079 | 332..976 | 98 | <- | Minus |
| arm_3L | 18874178..18874351 | 158..331 | 100 | <- | Minus |
| arm_3L | 18875419..18875491 | 85..157 | 100 | == | Minus |
